047223dd9a5c993c1b52703fde580c97 *DESCRIPTION
f5f614cea95ed1f15e674bf5a1bb6e1c *NAMESPACE
6db2521285de7fa523cea3bca8a9df63 *NEWS
98787424a29a6a20438d9f0d95861890 *NEWS.md
f8e9e9c5f492855c1ad71d8d07e84836 *R/GctMatrix.R
3718b544fabc81e2cfa2eb96db14911b *R/ampliseq.R
2126e9b11386fba62b064806d4f7dca8 *R/checkfile.R
b417b918ecf909ef776c72e9323c3a27 *R/iofile.R
67cae894e8617d4eb6cf016988566f8f *R/isGctFile.R
a5c0c2bdcf5e6a3253a5d35633883f55 *R/loadFile.R
e96b4ba862950db72ef16baf215bb761 *R/read_bed.R
63d9a6a5ea0a1d24d0d709c8e12008c5 *R/read_biokit_exprs.R
deacc32475367247b71ca72b749d5aef *R/read_chip.R
ffca22f4bd920811b5cedf94930903ae *R/read_cls.R
5544c48a782d961fb7a63cb13127aaa5 *R/read_david.R
75a13d180a0a8d81040c29e074c8161a *R/read_exprs_matrix.R
f0e25fec395f184e91e3dae4b00afe2c *R/read_fasta.R
23f5e1c71d1ca3c45226d169d249d3b2 *R/read_gct.R
85adec713cd1422574b33f7cc7e7cd33 *R/read_gmt.R
b7089d89f5fa5f4d0846dee3e30592c5 *R/read_illumina_sampleSheet.R
acd592c50fdeea061761799ac0892ea7 *R/read_pheno.R
91ad306f54dece73082dc96dd82ddb5b *R/read_trimmed_lines.R
12004e1660e868d8fd221901a114d664 *R/ribiosIO.R
ff03a57e0dd0a5b0123cdceb547ecb6d *R/write.tableList.R
c05c20a3369116a2f503db39f8aaa8d6 *R/writeMatrix.R
8eec068ee9e5bfff20bd0862f3c5730f *R/writeMatrix.tableList.R
079d7108f66f6118dd7be75c9965488e *R/writeStrList.R
559319cc60dd0c89932d1b3ca1ab26a6 *R/write_gct.R
73e7995332273798106ee948af21d0b1 *R/write_gmt.R
a23ebb73e0cfc6cfd7be719d7f48b4e5 *README.md
d1447e9353260fa756bd84fd2ebf4486 *inst/Rscript/subsetGctByGmt.Rscript
f20adfa705a128e393163eb97521bad5 *inst/Rscript/test-subsetGctByGmt.bash
b0311b0f5dbc1bd4b8b60248765d7da4 *inst/extdata/ampliseq-data/coverageAnalysis_out/IonXpress_001/001.amplicon.cov.xls
f36c963c50f2806a4e5cd5a78ff3e37c *inst/extdata/ampliseq-data/coverageAnalysis_out/IonXpress_002/002.amplicon.cov.xls
d0ac30b7067240bec3512c8fa2fc6fa2 *inst/extdata/ampliseq-data/coverageAnalysis_out/IonXpress_003/003.amplicon.cov.xls
8fd1381a3f1030a5e3f1d1fcd4f2bc47 *inst/extdata/biokit_expression_files/biokit-output-1.expression
d8e83c0294dcc92e9ca21ecafc6fa560 *inst/extdata/biokit_expression_files/biokit-output-2.expression
d493d9875393a5d893042447480ac650 *inst/extdata/biokit_expression_files/biokit-output-3.expression
1bbb312012ec5b0e8fcaf90534fa5e2a *inst/extdata/biokit_expression_files/biokit-output-4.expression
b8eccb48d26174f833c3744aed6e699d *inst/extdata/example-DAVID-output-subset.txt
42d315554eee9656237183747debf275 *inst/extdata/subsetGctByGmt_data/test-genesymbol.gct
9067539e222772d48609f1901162415b *inst/extdata/subsetGctByGmt_data/test.gct
ce9179fce237d1765f64d2dbc0d57fec *inst/extdata/subsetGctByGmt_data/test.gmt
c10f9cca489ab6be5d5658a6e0cbd6cc *inst/extdata/test.chip
9fd128c1ebfa1d6b352ce5b036a19ca4 *inst/extdata/test.cls
9067539e222772d48609f1901162415b *inst/extdata/test.gct
47398ccaac8e8c95a7cbbb5d3b61bb36 *inst/extdata/test.gmt
08f63867180dfc1c2669cbacf491347b *inst/extdata/testSampleInfo-cov.txt
eeec1c358dedb9349c34bfdb277d6836 *inst/extdata/testSampleInfo.txt
e279d93fe1a6325e98a472716f5b288a *inst/extdata/test_colnames.gct
7fde74e1d5afa113456c3dffe7845a3e *inst/extdata/test_colnames.txt
e364df156d6e141b069681d79dc47b69 *inst/extdata/test_lessStrict.gct
38e1ef79999c5f6271b18692e7410f63 *inst/extdata/test_nonnumbers.gct
12655de85ed36e606fc3ab3719c083a9 *inst/extdata/test_nonnumbers.txt
f26bf4a223563b2797fc610101379d9a *inst/extdata/test_read_exprs_matrix.gct
af240def2ca3c30e74c7323c51422123 *inst/extdata/test_read_exprs_matrix.tsv
74a8ab926ce4033747aad3312b82a093 *inst/extdata/test_read_exprs_matrix.txt
aa7d8bc3ea085371c88ac35c2f515328 *inst/extdata/test_read_exprs_matrix_desc.tsv
72224d0b8c63e5dd0809a92da3250ece *inst/extdata/test_read_exprs_matrix_duprownames.tsv
b21479dd4e30e0ab0743aaeb4cdad2b2 *inst/extdata/test_read_exprs_matrix_duprownames.txt
16f1639009ca9724f06a7aec434b4bfc *inst/extdata/test_read_exprs_matrix_full.tsv
a970ad37f4bd829299c8e0aca3fe70cc *inst/extdata/test_read_exprs_matrix_full.txt
48e5fe19b317f2f4d5c5182dd89b0dbc *inst/extdata/test_read_exprs_matrix_full_duprownames.tsv
ce9e96f396f306fd1aa125715f183618 *inst/extdata/test_read_exprs_matrix_full_duprownames.txt
8de24c73419b648980051250584af81c *inst/include/bios_headers/array.h
1dc9409289d6a8fd9478fdc2728146d2 *inst/include/bios_headers/format.h
84c372995daaaf8b7b7f38a51d7ba660 *inst/include/bios_headers/hlrmisc.h
8a8c002a04b7443bb492c05a2663f8c8 *inst/include/bios_headers/linestream.h
6e05a5f812d48e250a2e0c1e5b2bc08e *inst/include/bios_headers/log.h
34e5f82e4d6ba03a9c6cf02083684e33 *inst/include/bios_headers/plabla.h
6b2ffae63f9d136c0b5cacccdaf7c554 *inst/include/bios_headers/plabla_conf.h
45bfece8db378cb984356610a6659f96 *inst/include/ribios_io.h
e4cd0816a6e04c9da46d5f58d403f71c *man/GctMatrix.Rd
d96f4eecb8a22a9b1ceaade6f06eedc4 *man/as.matrix.GctMatrix.Rd
d455ed4db2c9b90dd703069655a752ab *man/as_numeric_matrix.Rd
3dc9975f0574c999e6b9a4b1346b17d9 *man/cbindGct.Rd
31cf4b3a48884d99e2ba5e91fb780aad *man/find_ampliseq.Rd
d1a7d9ececa853916b01a3a86902484f *man/gctDesc.Rd
d4ac7f607e32c58a7712a71db96ce20e *man/gctMatrix2longdf.Rd
097821054cc1d8af7d546ef8055ecc11 *man/getDataDir.Rd
c8751d982c8e8daaa77ca20f6aeae34b *man/iofile.Rd
b5febd1fb2a36acd3756f81a7303ad77 *man/isGctFile.Rd
17005c7f0e284378293b963aba7b757d *man/is_factor_file.Rd
fac70a79c5ba855d420f263322ca7fbd *man/loadFile.Rd
11abb8f28b81743c6a8752ad584566ef *man/loadObject.Rd
e311b5834bb0a1c76d3faa46294f3e15 *man/loadObjectInEnv.Rd
01a48dede27e368bc243b1af4e7686f0 *man/loadRDS.Rd
a1b808efd68188a910c132634a23330b *man/longdf2gctMatrix.Rd
e53ced747618282234388ee3d1af9550 *man/optional_suppress_warning.Rd
53dc19f3529f6d2a16a117a4e8a2e9ce *man/print.GctMatrix.Rd
edfb44c90f719991ef5052bb8aac677b *man/readMatrix.Rd
48d11672f37ab538cb645a2f15bd8c64 *man/readTable.Rd
ef4a3d9e19c35099d04e55bea9be9a09 *man/read_ampliseq_bedcovgct.Rd
4db9a6c721fd290a72b2caeab157c404 *man/read_annotated_ampliseq_amplicons.Rd
2b3d4d8117857c00c7c145378511c172 *man/read_bed.Rd
a45c317c9493fe7231ef43a9f6a8a154 *man/read_biokit_exprs.Rd
91f41413ff191987b0f12344ef42ec74 *man/read_chip.Rd
a07a1d892f252c626588828a9d76578f *man/read_david.Rd
a27f3c9e6c365da01efbef4417cdda4b *man/read_exprs_matrix.Rd
3bcfcbf38a25b3b78603c4f4c2fdace8 *man/read_factor.Rd
a0143ade237c83420be273990a6e0379 *man/read_fasta.Rd
00d9fbd4f8f7125cc56893ce1da1d789 *man/read_gct_matrix.Rd
e85319756ca8d287d5da069526b1de3b *man/read_gmt_dataframe.Rd
70376d122c892d328447c103fda812af *man/read_gmt_list.Rd
1e27a1f245ecaf70f06d4c4f6b2794b4 *man/read_illumina_sampleSheet.Rd
690a089210e18c2b2f127a3682c5decc *man/read_pheno.Rd
75769ff0f5f0a47675f65fcb4c1bacd6 *man/read_raw_ampliseq_amplicons.Rd
1ead3666830ddf2cd1eaf0c998d072fb *man/read_trimmed_lines.Rd
f79d37cc1b669a12c4a4b0b26a8743c8 *man/ribiosIO-package.Rd
cb140d438d52189e383ba780a7c6e492 *man/setDataDir.Rd
862f8f4c97d92610297748a284e50ceb *man/strList2DataFrame.Rd
4ae03c903258889e9b0bfe311d0b776f *man/sub-.GctMatrix.Rd
09c859ec0cef1f43f25f6cbe0ed589ae *man/write.tableList.Rd
8622c8f06e6b9f37a4ad1d35010acc52 *man/writeMatrix.Rd
e1cc5fa12d84c7aa9cf0f70d5b15839d *man/writeMatrix.tableList.Rd
9a36c9a3f058324a594909053cb6606d *man/writeStrList.Rd
aba4d8381be0d31b8fedfddfb5873581 *man/write_annotated_ampliseq_amplicons.Rd
4015d1dc35a66e123b37edc11b0bf2e4 *man/write_factor.Rd
cf9672ca297de305d43c2aa24be492cb *man/write_gct.Rd
fb79569ce9209f1fd7adb66677721e15 *man/write_gmt.Rd
d2beb7bf6b521d707c24c31ac9983ade *src/Makevars
0c7bf8b41281734207784589345cdeea *src/array.c
a4d5ef9013df85ee76d497f1beb1d9d3 *src/format.c
174cb16cdc85d8166c5f4ff9454ddd23 *src/hlrmisc.c
e45a916f09ab2b78459b17affcd42eb9 *src/init.c
8d1f36f9fcb6cdf6b9974f334e5b5eef *src/linestream.c
41cd9979b33d7ea6c426d2c4cc18b800 *src/log.c
fa0e9f43c8c99d9c92e7d509bf0239d6 *src/plabla.c
5c5f3323410b3e1e303067a4c814aafc *src/read_biokit_exprs.c
05fb8aa7d420041c57a982b4d29fc49f *src/read_chip.c
3a888a2fbf8198e0f8c83853fb43d897 *src/read_gct.c
39c3129d538111d285f8d49a29d83c42 *src/read_gmt.c
cdaf073d252c3bb0b22a98df58de7e6d *src/write_gmt.c
c5020c49a4ff21e68ab874ec4a4f7610 *tests/testthat.R
5a5099bccde52fb8f56766969a5fef2a *tests/testthat/test_fasta.R
1870cfde6b00e7804e5445cb730675eb *tests/testthat/test_loadObject.R
562603f6183802d1c90de69bbac4ad59 *tests/testthat/test_read_biokit_exprs.R
f8ce26cfdca45e31d1149312565682c3 *tests/testthat/test_read_exprs_matrix.R
89bb7d36643604258b4fbf48b5b2be8f *tests/testthat/test_read_gmt.R
6eb1297a707414bf7ae59219a227c495 *tests/testthat/test_writeMatrix.tableList.R
5d2b92a3a9e5dc97bb9c3c81b7651c81 *tests/testthat/test_write_annotated_ampliseq_amplicons.R
