c8f14d96ab83930122a4b19c54a3e1ae *DESCRIPTION
47c8668c5638e4b461f3d8d818d27c3f *NAMESPACE
a6579ad99f7aefd232d8ed1b7b36848c *NEWS.md
53799b082c6d373e5b116f80c533cfa6 *R/annotatePeptides.R
3355e0042f1f82ce44ebb5af019de45b *R/cdsw.R
c6b530f9d98af2c53a127903bb4032de *R/computeFDR.R
a407a9fde4cfb88b54ae6e191962eee6 *R/createDecoyDB.R
ccb57bb8d942cfe1cb6b23873312fd00 *R/create_fgcz_fasta_db.R
4b5beb505b2cd962cc1f187408dd46e1 *R/greedy.R
3316622a073ec2797c2534f5b4871660 *R/hello.R
5afb9fd9c06e807d6cc4f7a40f69c1ff *R/loadContaminantsFasta.R
9163df49d6ae0493212736654bbc5cf8 *R/prepareMatrix.R
33e4a2bf1dbc4c16c3f61e523cb4790b *R/readFasta.R
c4bb1b2a41ae60aea05f38c9c1ba2f75 *R/readjustWindow.R
09e1216da2d3d4effcd09acc03559820 *R/removeSignalPeptides.R
5bd43a08407bd8db5575aaff0de01272 *R/reverseSeq.R
aebce52a0f1622a237bda3c5b8561b49 *R/writeFasta.R
cd140b5ece67be3d368d501b51d98466 *R/zzz.R
8bae456e8db002b3153b4a63aec15013 *README.md
979466d7757e7a15c0a0248d5cbcf9e4 *build/vignette.rds
824a3277e06720e5dd27f679ef2f4a5d *data/datalist
dc24af2f414600cbd628f23fba6bd939 *data/fdrSample.rda
f0dd8f2cee43e5647d0f41e878954bde *data/masses.rda
060ce6e155616f686eb9474033e2bd34 *data/pepprot.rda
9cd584d4ec21ab1061c2118489f30264 *data/protpepmetashort.tab.gz
c00a06e9d6fdf70db273dd7c404b92fd *inst/creatingDBs/CreateDB.Rmd
ebfdbf08bf230b2eef9a6ca1fb8ddb90 *inst/creatingDBs/fixCont.Rmd
94ce969194fec8dca3a08f2714b2e0ef *inst/creatingDBs/specAnnotationMilena.Rmd
952664a5d1ce9ac55c84fe9b4ab3603f *inst/doc/CreatingDecoyDB.R
d6f6f540bd5e07a36d501c5f22ef482b *inst/doc/CreatingDecoyDB.Rmd
3fdd8037b4ab3d6ce20df6c3c9765a64 *inst/doc/CreatingDecoyDB.html
0be51007e93717e74dc5d630ff11617a *inst/doc/PeptideAnnotationwithProzor.R
3f0aee3062f34f7f220df0559679d978 *inst/doc/PeptideAnnotationwithProzor.Rmd
1187e76732552105b835aedff2e1b826 *inst/doc/PeptideAnnotationwithProzor.html
d521c5c27f0f5d7f6a2cc698e8a1c135 *inst/doc/TargetDecoyFDR_Example.R
f2256fc3e385b9117a4a9f26022faaf7 *inst/doc/TargetDecoyFDR_Example.Rmd
4c67ac453d573264f7c836d372a7c13f *inst/doc/TargetDecoyFDR_Example.html
5b265238ae7cc0831aec40fc4e9181e5 *inst/doc/cdsw.R
9cf307ed2b1a9b77c4d923df6e3ffe53 *inst/doc/cdsw.Rmd
669a53ed056cf44816eab51dc4c51493 *inst/doc/cdsw.html
81d1840e09d798c68bddaf10e670c801 *inst/extdata/IDResults.txt.gz
944cf25abf82798b7c43000693b3f2a2 *inst/extdata/fgcz_contaminants2019_20190708.fasta.gz
a06ccd888317a39a9452aeb9718a7a2f *inst/extdata/fgcz_contaminants2021_20210929.fasta.gz
4a6e680d66e380effa8fbb05046a0c1e *inst/p1000_db1_example/Annotation_allSeq.fasta.gz
a169d24935310e46b804e4c15bf63c8b *inst/p1000_db1_example/Annotation_canSeq.fasta.gz
0545fe856dae19c90378217b6d210f9d *inst/p1000_db1_example/annotation.txt
c8d3b4b32da6f52dcb18817234339be6 *inst/script/fgcz_create_fasta.R
a05cbd4d13f24464f264d0499459fa05 *man/Cdsw-class.Rd
8f9e4ea417da659e4034bf0524e53d02 *man/annotateAHO.Rd
c25a874ffdb459c8554773483592abbd *man/annotatePeptides.Rd
4bedb5153ff37899c4226b6187b50fe3 *man/computeFDR.Rd
9ca2466beb5b4b88b7b86257f0cd3838 *man/computeFDRwithID.Rd
b9998cefd9e80765e99fd951183483f7 *man/createDecoyDB.Rd
1b34a0298c2cf72ebf27f03c54a287ea *man/create_fgcz_fasta_db.Rd
2911a6996d69d08abd1496c8bd3d2bc7 *man/fdrSample.Rd
d1d819caa143144dfcf91693e03fec7a *man/greedy.Rd
35fd03dca256f9d2eca9b05da662faf8 *man/greedyRes2Matrix.Rd
1931cbe05e8485c382838b17c1e75317 *man/hardconstrain.Rd
278dd08e31db31e16cb2ccbc05028572 *man/loadContaminantsFasta2019.Rd
7342f60b4768efddc4ab87e4f943377c *man/loadContaminantsFasta2021.Rd
79b1ce5071c66602b93786b6a052df0d *man/makeID.Rd
568e5c07cb137a87d369db771fd4ea30 *man/makeIDUnip.Rd
ed5ef21ce0825e4e24d64b5c91095950 *man/masses.Rd
279f952f9c9645d45d796ed5a00bc9f1 *man/objectiveMS1Function.Rd
5063349204f8d2c289e9110830ecfa77 *man/pepprot.Rd
576b38ec7776244e3da375fba1a26755 *man/plotFDR.Rd
b31367a5383c6ab952e4c9bc27b37d66 *man/predictScoreFDR.Rd
dab35301c6b9d14db516c1d8bf7d138b *man/prepareMatrix.Rd
10493d94dddf7e2a5c55fced1c97feef *man/protpepmetashort.Rd
8bf403cda441982795859d8e3ed1f5b6 *man/prozor.Rd
5a5b6e5b0f976314622055b9a8dfb567 *man/readPeptideFasta.Rd
e893c1db8043f3e9f7d1cb595615ce91 *man/readjustWindows.Rd
3b25228c901621f629d4397bbbd4b316 *man/removeSignalPeptide.Rd
a89cb5dd1932fa782febd710ff6478a6 *man/reverseSeq.Rd
962b9bcb9b9efa5685c5441cb426a54a *man/writeFasta.Rd
d6f6f540bd5e07a36d501c5f22ef482b *vignettes/CreatingDecoyDB.Rmd
3f0aee3062f34f7f220df0559679d978 *vignettes/PeptideAnnotationwithProzor.Rmd
f2256fc3e385b9117a4a9f26022faaf7 *vignettes/TargetDecoyFDR_Example.Rmd
e4a5a045f08e06ae0855f23c337febd9 *vignettes/bibliography.bib
9cf307ed2b1a9b77c4d923df6e3ffe53 *vignettes/cdsw.Rmd
