cf7dc2bbdf7cf322edff5a7d8d00e11c *DESCRIPTION
6c674c81b90cf8938647bf79ee7d7724 *NAMESPACE
c2ebddd539cb98d5ab2fbaffa88db014 *NEWS.md
6d9a227a43053df2ae60a5739dbff0d1 *R/apply.scaling.R
0883dce232612b4754fe8adde10c3045 *R/calculate.cis.matrix.R
7a9d75df8d0db1773e8f150681332d00 *R/calculate.integrative.similarity.matrix.R
546423c427f1f9fe1a69b51c1dacafdd *R/calculate.scaling.R
d88aeeb81fa2938a70fb95fd570aa6e2 *R/cluster.patients.R
ab6233c1ba54c863031f9db43e9a3c8d *R/combine.integrative.features.R
22605f52e942e7269420c5d0e9e9e3c0 *R/create.autoencoder.R
f900a807848c92e66eced09afdb9ae1b *R/create.autoencoder.irf.matrix.R
94c5b8ca71b5a20209c3ba6a9d6d49bb *R/load.molecular.aberration.data.R
35e5ad1d24a3b418699918f578ac20f6 *R/read.scaling.factors.R
d738ffd9add2d43d862eccd3798204d7 *R/write.scaling.factors.R
e49a2f149f303f272aaa12e525bcf858 *README.md
19c85d8c8e726250afdd4eb429839575 *build/vignette.rds
1c7d8cfa601275a9b721f8466c105bdb *inst/doc/iSubGenGuide.Rnw
20db50781c0efaad17b04e582dde5a61 *inst/doc/iSubGenGuide.pdf
8245c2b7a251511f7056648140184ee4 *inst/exdata/cna_gene_recenter.txt
605d95998981d55c654c7bb478a3f1e1 *inst/exdata/cna_gene_rescale.txt
43c437ee1b3a2581db2e4f72bf50b897 *inst/exdata/cna_profiles.txt
1551dc238e5c5e727111cb9d0d42d005 *inst/exdata/grs_profiles.txt
33776971deb868dc9864e7391373b257 *inst/exdata/methy_gene_recenter.txt
7aeecb4ced3d3e00b177136205a31f3a *inst/exdata/methy_gene_rescale.txt
30e5e79ad7f4ef02d7e16f81fd54760a *inst/exdata/methy_profiles.txt
2a16be7d92a3a9c1b93614ab3cec40c4 *inst/exdata/non_coding_snv_profiles.txt
24f11c9590316793c0d7f3e8d0e7f745 *inst/exdata/snv_gene_recenter.txt
3aac9d95227e24bb3f904d957f0c88d6 *inst/exdata/snv_gene_rescale.txt
23aceb5d99f05b3703fb426b100cdd89 *inst/exdata/snv_profiles.txt
9cf3d721dfaab3e57ef7b1cd16202482 *man/apply.scaling.Rd
a7bb47f82c6b5f86666fbe56a317f729 *man/calculate.cis.matrix.Rd
9f51c48926776a521b221f1d034efaaa *man/calculate.integrative.similarity.matrix.Rd
60a6191d64688e52b3388f4e8a456510 *man/calculate.scaling.Rd
c4f40130dcdb97b96027f8272b906eee *man/cluster.patients.Rd
946e0b057a24a727bfc08fddd6853baf *man/combine.integrative.features.Rd
28b43b7a4ebe0bb7dc789c4acd54672c *man/create.autoencoder.Rd
1ddfef72f5ee169a863ca03c669bd932 *man/create.autoencoder.irf.matrix.Rd
755f55861a121bc8bbf1456f67565dcc *man/load.molecular.aberration.data.Rd
6740b556b69cdd9b7d8fd46cad0efe65 *man/read.scaling.factors.Rd
826114136fbb718b095d49c0463bac23 *man/write.scaling.factors.Rd
5dad7173f1a51a0452d89a9c604a25ea *vignettes/Figures/iSubGen_figure_methodology_autoencoders.png
d1cecf2d86db027be1f5570a2a78747b *vignettes/Figures/iSubGen_figure_methodology_correlations.png
c0e0ab32d1b261270c1a2feba3d1f63c *vignettes/Figures/iSubGen_figure_methodology_overview.png
1c7d8cfa601275a9b721f8466c105bdb *vignettes/iSubGenGuide.Rnw
