b650990c556a20f90c1eff24fbc48957 *DESCRIPTION
e0af75740d01b90a7f670c360ad1acb9 *NAMESPACE
9d8d1a99de8123d36e4b070b3d30b3ad *R/binomial_test.R
61605bac18b1bfbff184c71c3d980b5a *R/blast_command_found.R
050882889fc6be531e96e1c7f4e757fb *R/blast_version.R
c78bf504f5597b5b9155b9ebfc949739 *R/contains_wildcards.R
8a47bbba6472ad2a0158da0f12a7da4c *R/decode_quality_scores.R
20efcd1926b881504e48406c37025878 *R/format_reference_database.R
3afdbec63eab4de51ace182200c14217 *R/get_consensus_taxonomy.R
59b8eaa56751b8e906436b4bf172c4ce *R/get_taxonomic_level.R
0cd1772ea68388d9eddd07c8b6b5c03c *R/get_taxonomies.IUCN.R
38de41123827541310559c22cf6163d7 *R/get_taxonomies.species_binomials.R
eba49340b71471a85bfad42b860df344 *R/isolate_amplicon.R
5507e93de42b19026c18070309ad8ea9 *R/local_taxa_tool.R
4dc468e84b7baa9f47bdceb4940b619f *R/merge_pairs.R
1e5fd02566b25391ad584adaa9217328 *R/read.fasta.R
f3357b8e7a2c6c4f1ec697931f47a4d8 *R/read.fastq.R
ccd82123897bae8b9a7a91cb077c7d66 *R/reverse_complement.R
4a276bf82f93809dbd58ce90991e5b00 *R/substitute_wildcards.R
193d42b76dd54e888879a0a88fb47b7a *R/trim_sequences.R
8001311f0e6db69240a852f0325b5800 *R/truncate_sequences.length.R
d25dda550cc94853e9b986b129bf1774 *R/truncate_sequences.probability.R
a1bef30f912aaac2598558207c23cad7 *R/truncate_sequences.quality_score.R
080654a20c01bdb9d32189a1c08d22db *R/write.fasta.R
a3f142c2b49d73cef5717120b7a5bd63 *R/write.fastq.R
c7cc113a1a239b73c560a52880cedc4b *R/zzz.R
d2fa37306bd55c42e2940ad1b058887a *README.md
59ffff4640a7e792ab9b4e184e9db2ff *inst/CITATION
4116fe953417c96aa6b5f4581096b5ae *inst/extdata/example_blast_database.fasta
90cfa52759fcf97f7aac46ff9001897c *inst/extdata/example_blast_database.fasta.ndb
a6c045b9f619ca27d68cbdc710d3891c *inst/extdata/example_blast_database.fasta.nhr
71f437617cb571ce64fc41c85293148b *inst/extdata/example_blast_database.fasta.nin
b7c16f35ec906eff3e7f22701415997d *inst/extdata/example_blast_database.fasta.not
83c514df785e460d5e11ac071118c9bc *inst/extdata/example_blast_database.fasta.nsq
de1250813f0c7affc6d12dac9d0fb6bb *inst/extdata/example_blast_database.fasta.ntf
b343d3640e56a107008f04630a460498 *inst/extdata/example_blast_database.fasta.nto
db3d0613b7600659a6f31cf230421bfb *inst/extdata/example_common_names.csv
1aa366b99ccef489753e0d0c3a978d16 *inst/extdata/example_local_taxa_list.csv
3570285febc3175bcfa98627fcd3bae6 *inst/extdata/example_query_sequences.csv
c07017c772f70e4519ef2e3949827811 *inst/extdata/example_query_sequences.fasta
7251149a80e7d61497d4ed3204620c65 *inst/extdata/example_query_sequences.fastq
e83c2611ced7672af5acdf0e274d0ad3 *inst/extdata/example_reference_sequences.fasta
ec9c5e377134b2c268a384766a04424e *inst/extdata/example_species_binomials.csv
da827bf3e7e29871a827b9e0daa64ce7 *inst/extdata/example_taxonomy.csv
4e7ae8ca583f0651067be3e451e3bef2 *man/binomial_test.Rd
a06f98408a32b8381123c1f46727a43e *man/blast_command_found.Rd
9334dbe53536808ca548e5029499df1e *man/blast_version.Rd
e61fd33a1e065c2839dfb039588f4702 *man/contains_wildcards.Rd
f0daf8ef686dbe8e84b89b353ce59f20 *man/decode_quality_scores.Rd
3745541d431c1c052e4a4f3195e411b7 *man/format_reference_database.Rd
dcfc0c9b514202c89f3bc69cde5c9bdb *man/get_consensus_taxonomy.Rd
2cee09255e41f8b4f61b54f3d4b32ad8 *man/get_taxonomic_level.Rd
e7705b186fcc729b68aac3117f92a2cf *man/get_taxonomies.IUCN.Rd
754b61733a3713bcb1cfb42b86b970bc *man/get_taxonomies.species_binomials.Rd
e5677d1520129e32a36fea152f6932d3 *man/isolate_amplicon.Rd
30a032a45be9244c354bba94900e8dd7 *man/local_taxa_tool.Rd
6f7ffffe7fd0432ca837409cb9648ca4 *man/merge_pairs.Rd
134f3f7cd13021041c710fcd20c2f595 *man/read.fasta.Rd
c5c3d4fcbbab50ed53a5c26e505b2343 *man/read.fastq.Rd
0b19f39f50b663cb9fc8895fbfa787e7 *man/reverse_complement.Rd
8334ba35cd06bc5f286386568437c5c0 *man/substitute_wildcards.Rd
234cec7aaf5124ded3392b895838444b *man/trim_sequences.Rd
1f7f0d07ad53820001527259c464c14e *man/truncate_sequences.length.Rd
7fec7e048633e8aaf3ed69fe30dba009 *man/truncate_sequences.probability.Rd
30ba7fd9e0a4925e1e4f18f154a0e4a5 *man/truncate_sequences.quality_score.Rd
b4b40effb394318adbd6e72427658ddd *man/write.fasta.Rd
a9cdde6b36c2ea0c32b3aca57cb773e4 *man/write.fastq.Rd
