5b64f55d3f6e2fd548d2f3c711cb76e6 *DESCRIPTION
7aceb3e4fa7dbb2e5f2ac48013420cbc *NAMESPACE
57a28fc18d69ba235ee86918431fa54f *R/CoNI_functions.R
78f72ab4ac2e5efc786c83d9c479283f *R/Data.R
f6e1bd5e4cf6be1bea5ae8d1ab1d7fc6 *build/partial.rdb
78a9c5b2875e6941d9fc4a2167c8cdf4 *build/vignette.rds
00346c693129d2ae674b4c0210ad8990 *data/Chow_GeneExpData.rda
4d758955f1a709c9d746ae0c1ea6fc18 *data/Chow_MetaboliteData.rda
73dc32e079dfb540fc0448a87214c718 *data/CoNIResultsHFDToy.rda
5939bf8810362b08da424c6b1b76f946 *data/CoNIResults_Chow.rda
bb557dd909ded14de53ee2503e785b13 *data/CoNIResults_HFD.rda
289d7a0f9d49868df19f64773c3655e9 *data/GeneExpToy.rda
1ec11b5688b9f523e9131d1860508296 *data/HFD_GeneExpData.rda
8c07230f7a3e67150ac57da7458a52c1 *data/HFD_MetaboliteData.rda
e529bac5940aac1c6a1c8ed3d4d7f265 *data/MetColorTable.RData
d2874138dee18746763ce5db86d94c55 *data/MetaboExpToy.rda
0cf3cdc5b3c1d3873cc2513c8237e439 *data/MetaboliteAnnotation.RData
bb8d48b35a33f6fe3a64a79f9a1e1657 *data/VertexClassesSharedGenes_HFDvsChow.rda
b8db1a6a7dcc6e4ccbe6a3c1cfcec1ef *inst/CITATION
d907d98f5be9bf9001905464981a55f6 *inst/doc/Full_RunCoNI.R
90e770b27c4970b7f97b3200b84a4021 *inst/doc/Full_RunCoNI.Rmd
613edfc0ffcb60a87168bd45d29379cf *inst/doc/Full_RunCoNI.html
59e6d8f76be16eef680220f53b0d4e5e *inst/python/Compare_Triplets.py
bb960c340ae1537197ef00bcffae637a *inst/python/ComparisonClasses.py
b9bd23f517030aed9eaab794e7adacec *man/Chow_GeneExpData.Rd
6be4c9d84f0c938f6970c0a71e607f02 *man/Chow_MetaboliteData.Rd
9e7548e513d33eb650ed06722597d8a6 *man/CoNI.Rd
63dd79ed358798c07a12cd09a5448b27 *man/CoNIResultsHFDToy.Rd
14c2fa807a8539d1800cc4c7dce8e874 *man/CoNIResults_Chow.Rd
a07712547366f2ebbf9a4fe662c31705 *man/CoNIResults_HFD.Rd
a8d9a69563cd4d7071f3a8eb0acb3001 *man/Compare_Triplets.Rd
db4f19a31cda59dcee0687b31cad52f0 *man/Compare_VertexClasses_sharedEdgeFeatures.Rd
02b77fbe43673044b42bdc11c15bb989 *man/GeneExpToy.Rd
62781ab0881266d30a4192b4a3fb41ab *man/HFD_GeneExpData.Rd
0c1c2c60375f6db3213d9e7422e46f41 *man/HFD_MetaboliteData.Rd
cf34af60a8bad83a9dd7d4d6d1a78d10 *man/MetColorTable.Rd
4a8e4815bc2cc4816826acc9de428198 *man/MetaboExpToy.Rd
39713c548b09b1f9ab1fb8e6c66aab2d *man/MetaboliteAnnotation.Rd
def92580c53076bde9eaeeb80592e195 *man/NetStats.Rd
dc7b1a3aab56437301711cf744da6611 *man/VertexClassesSharedGenes_HFDvsChow.Rd
2e06a9d92dc51fd3f539f0c280706300 *man/assign_colorsAnnotation.Rd
e84e05c2894d7de6eea13790aa57a016 *man/barplot_VertexsPerEdgeFeature.Rd
26e7c143803d26f91eaa2c3278d0bb90 *man/checkInputParameters.Rd
26e38e4dbd82caac699da4a3b643af6b *man/check_outputDir.Rd
41505524985bc625ce3949f9804fb372 *man/check_previous.Rd
d14622b243d9be42873689ee3dd2f032 *man/chunk2.Rd
862250711d211c6a3534d08e5ae57a17 *man/compare_sampleNames.Rd
165e7c21cea9528744637951564a6d1a *man/countClassPerEdgeFeature.Rd
4403ee3435f4340fd0d2181804fe9015 *man/createBipartiteGraph.Rd
a2dc1a67271090216efe9470294f8b1f *man/createBipartiteTable.Rd
a26b6e0ff4d67adad51955d76f09f449 *man/create_GlobalBarplot.Rd
9b61147b55467ead70bb08f3811a6365 *man/create_edgeFBarplot.Rd
231032cf2ea8880708bcda32722bc62e *man/create_stackedGlobalBarplot_perTreatment.Rd
d706afc5030fef0bd5f746f28361348b *man/delIntFiles.Rd
e494adfc64b3f4fc9b59fe2119d6268f *man/do_objectsExist.Rd
16e9743bcad2a4a0e6dad26728e50f4c *man/find_localControllingFeatures.Rd
bc440728d849c141061ca48c5c39684c *man/flattenCorrMatrix.Rd
cc6b39bb33d50650aebe92ba2e91f615 *man/generate_network.Rd
144b8af375c0912dad758a875094b889 *man/getVertexsPerEdgeFeature.Rd
9e47c65747a409fbd997de4639ab7330 *man/getVertexsPerEdgeFeature_and_Grid.Rd
2f09c902d6afb45e89f23390722f6cd7 *man/get_lowvarFeatures.Rd
3e079a3af98b6abb4cf10432bf7a729c *man/getcolor.Rd
f0b34b24cf7384669a6ebcdff847b2b3 *man/getstackedGlobalBarplot_and_Grid.Rd
5ed386a254742bed8984eb5a8430e030 *man/getvertexes_edgeFeature.Rd
a56a14752ecbbfe0fa2cd4155594fb01 *man/labels2colors_2.Rd
9eb58b7a8821c54feda42e49a390b36d *man/merge_outpuSplitFiles.Rd
37600d9800fedbe47c370e8316185b85 *man/obtain_groupcolors.Rd
37ae65acdc8d34e9cf91a009dc443cf9 *man/plotPcorvsCor.Rd
92922d116aae3e3b8483f8c47f8ff289 *man/sig_correlation2.Rd
953f2a9b4343e4286a50a2b52514db3c *man/sig_correlation2Dfs.Rd
d9a6e94012e07d9a784e28a5bb806fc8 *man/split_df.Rd
82cc89d4cce174cf74b03a1c0b710e8c *man/tableLCFs_VFs.Rd
5197e220560df4e5d490f8c58fbff4ae *man/top_n_LF_byMagnitude.Rd
f7bbfc83fedf6245239f8253619d5b2e *man/writeTable.Rd
90e770b27c4970b7f97b3200b84a4021 *vignettes/Full_RunCoNI.Rmd
