#                                                                            --- full sequence --- -------------- this domain -------------   hmm coord   ali coord   env coord
# target name        accession   tlen query name           accession   qlen   E-value  score  bias   #  of  c-Evalue  i-Evalue  score  bias  from    to  from    to  from    to  acc description of target
#------------------- ---------- ----- -------------------- ---------- ----- --------- ------ ----- --- --- --------- --------- ------ ----- ----- ----- ----- ----- ----- ----- ---- ---------------------
Rer1                 PF03248.12   171 AT2G18240.1          -            221   2.3e-61  206.4  10.4   1   2   4.3e-65   7.1e-61  204.8  11.2     4   168    24   181    21   183 0.96 Rer1 family
Rer1                 PF03248.12   171 AT2G18240.1          -            221   2.3e-61  206.4  10.4   2   2      0.43   7.2e+03   -3.6   0.0    55    67   187   199   184   217 0.69 Rer1 family
DUF4220              PF13968.5    352 AT5G45530.1          -            798   4.6e-78  263.0   0.0   1   1   1.5e-81   1.3e-77  261.5   0.0     1   344    51   396    51   427 0.78 Domain of unknown function (DUF4220)
DUF594               PF04578.12    55 AT5G45530.1          -            798   4.7e-24   83.6   1.5   1   1   1.3e-27   1.1e-23   82.4   1.5     3    55   726   778   724   778 0.96 Protein of unknown function, DUF594
DEAD                 PF00270.28   176 AT1G27880.2          -            890   6.7e-20   71.5   0.1   1   1   3.4e-23   1.9e-19   70.0   0.1     2   171   272   433   271   438 0.83 DEAD/DEAH box helicase
Helicase_C           PF00271.30   111 AT1G27880.2          -            890   3.2e-18   66.0   0.0   1   2      0.31   1.7e+03   -0.7   0.0    21    72   314   364   307   367 0.74 Helicase conserved C-terminal domain
Helicase_C           PF00271.30   111 AT1G27880.2          -            890   3.2e-18   66.0   0.0   2   2   5.4e-21     3e-17   62.9   0.0    15   110   485   580   470   581 0.91 Helicase conserved C-terminal domain
ResIII               PF04851.14   171 AT1G27880.2          -            890    0.0012   18.8   0.1   1   2       1.7   9.4e+03   -3.7   0.1   102   123   214   232   188   256 0.54 Type III restriction enzyme, res subunit
ResIII               PF04851.14   171 AT1G27880.2          -            890    0.0012   18.8   0.1   2   2   1.5e-06    0.0084   16.0   0.0     4   169   270   430   268   432 0.74 Type III restriction enzyme, res subunit
TIR                  PF01582.19   176 AT1G56520.1          -            897   7.3e-46  156.1   0.0   1   1   1.3e-48   1.2e-45  155.3   0.0     2   164    13   179    12   189 0.95 TIR domain
NB-ARC               PF00931.21   288 AT1G56520.1          -            897   1.9e-17   63.1   0.0   1   1   3.6e-20   3.5e-17   62.3   0.0     4   262   192   440   189   456 0.78 NB-ARC domain
LRR_3                PF07725.11    20 AT1G56520.1          -            897     1e-07   31.4   1.1   1   2     1e-10     1e-07   31.4   1.1     1    20   603   622   603   622 0.98 Leucine Rich Repeat
LRR_3                PF07725.11    20 AT1G56520.1          -            897     1e-07   31.4   1.1   2   2       1.3   1.3e+03   -0.6   0.5     1    14   626   640   626   641 0.79 Leucine Rich Repeat
LRR_8                PF13855.5     61 AT1G56520.1          -            897   2.3e-07   30.4   7.0   1   6       1.1   1.1e+03   -0.6   0.0    15    31   544   560   535   561 0.88 Leucine rich repeat
LRR_8                PF13855.5     61 AT1G56520.1          -            897   2.3e-07   30.4   7.0   2   6    0.0013       1.3    8.8   0.3     2    58   603   657   602   661 0.90 Leucine rich repeat
LRR_8                PF13855.5     61 AT1G56520.1          -            897   2.3e-07   30.4   7.0   3   6    0.0064       6.2    6.6   0.2     2    59   626   682   625   683 0.88 Leucine rich repeat
LRR_8                PF13855.5     61 AT1G56520.1          -            897   2.3e-07   30.4   7.0   4   6      0.11   1.1e+02    2.6   0.1     2    57   649   703   648   706 0.66 Leucine rich repeat
LRR_8                PF13855.5     61 AT1G56520.1          -            897   2.3e-07   30.4   7.0   5   6   4.9e-06    0.0048   16.5   0.0     2    60   717   772   716   773 0.87 Leucine rich repeat
LRR_8                PF13855.5     61 AT1G56520.1          -            897   2.3e-07   30.4   7.0   6   6     0.002         2    8.2   0.1    27    59   763   794   760   795 0.70 Leucine rich repeat
LRR_4                PF12799.6     43 AT1G56520.1          -            897   2.7e-07   30.6  17.6   1   5       8.4   8.3e+03   -2.6   0.0    19    33   550   563   535   566 0.71 Leucine Rich repeats (2 copies)
LRR_4                PF12799.6     43 AT1G56520.1          -            897   2.7e-07   30.6  17.6   2   5    0.0066       6.5    7.2   0.1     2    33   626   658   625   671 0.81 Leucine Rich repeats (2 copies)
LRR_4                PF12799.6     43 AT1G56520.1          -            897   2.7e-07   30.6  17.6   3   5      0.01        10    6.6   0.3    12    38   684   711   649   715 0.56 Leucine Rich repeats (2 copies)
LRR_4                PF12799.6     43 AT1G56520.1          -            897   2.7e-07   30.6  17.6   4   5    0.0017       1.6    9.1   0.0     1    39   716   756   716   760 0.88 Leucine Rich repeats (2 copies)
LRR_4                PF12799.6     43 AT1G56520.1          -            897   2.7e-07   30.6  17.6   5   5   4.8e-06    0.0047   17.2   0.2     3    42   763   804   762   805 0.90 Leucine Rich repeats (2 copies)
TIR_2                PF13676.5    102 AT1G56520.1          -            897   2.6e-05   24.4   0.1   1   2   9.5e-08   9.3e-05   22.6   0.0     1    85    15   101    15   120 0.79 TIR domain
TIR_2                PF13676.5    102 AT1G56520.1          -            897   2.6e-05   24.4   0.1   2   2       6.1     6e+03   -2.5   0.1    16    55   257   295   256   296 0.80 TIR domain
AAA_16               PF13191.5    170 AT1G56520.1          -            897    0.0002   21.7   0.3   1   1   7.8e-07   0.00077   19.8   0.3     3    63   187   243   186   319 0.74 AAA ATPase domain
AAA_18               PF13238.5    130 AT1G56520.1          -            897     0.001   19.5   0.0   1   1   2.4e-06    0.0024   18.3   0.0     1    69   210   274   210   332 0.69 AAA domain
AAA_22               PF13401.5    137 AT1G56520.1          -            897    0.0048   17.1   1.0   1   1   2.4e-05     0.024   14.8   1.0     7   113   209   312   204   324 0.64 AAA domain
ATPase_2             PF01637.17   233 AT1G56520.1          -            897     0.015   15.1   0.0   1   1   4.7e-05     0.046   13.5   0.0     8    82   193   265   190   311 0.64 ATPase domain predominantly from Archaea
PhoH                 PF02562.15   205 AT1G56520.1          -            897     0.028   13.8   1.1   1   2    0.0036       3.5    6.9   0.2    18    39   206   227   192   251 0.82 PhoH-like protein
PhoH                 PF02562.15   205 AT1G56520.1          -            897     0.028   13.8   1.1   2   2     0.011        11    5.3   0.0    87   161   257   332   240   341 0.85 PhoH-like protein
NACHT                PF05729.11   166 AT1G56520.1          -            897     0.029   14.2   0.0   1   1   5.8e-05     0.057   13.2   0.0     3    95   210   304   208   336 0.81 NACHT domain
AAA_23               PF13476.5    200 AT1G56520.1          -            897     0.039   14.4   0.0   1   2   0.00035      0.34   11.3   0.0    20    50   208   238   192   284 0.80 AAA domain
AAA_23               PF13476.5    200 AT1G56520.1          -            897     0.039   14.4   0.0   2   2       1.4   1.4e+03   -0.5   0.0   118   143   818   843   811   864 0.84 AAA domain
ABC_tran             PF00005.26   137 AT1G56520.1          -            897     0.044   14.2   0.0   1   1   9.6e-05     0.095   13.1   0.0    12    36   208   232   200   276 0.89 ABC transporter
NTPase_1             PF03266.14   168 AT1G56520.1          -            897     0.062   13.1   0.0   1   1   0.00016      0.16   11.8   0.0     2    87   210   293   209   303 0.79 NTPase
AAA_29               PF13555.5     61 AT1G56520.1          -            897     0.079   12.6   0.1   1   2    0.0013       1.3    8.7   0.1    18    42   201   227   194   232 0.80 P-loop containing region of AAA domain
AAA_29               PF13555.5     61 AT1G56520.1          -            897     0.079   12.6   0.1   2   2      0.36   3.5e+02    0.9   0.0     3    25   583   606   582   608 0.86 P-loop containing region of AAA domain
LRR_1                PF00560.32    23 AT1G56520.1          -            897      0.15   12.6  14.8   1   8       8.6   8.5e+03   -1.9   0.0     1    13   603   615   603   621 0.83 Leucine Rich Repeat
LRR_1                PF00560.32    23 AT1G56520.1          -            897      0.15   12.6  14.8   2   8       1.9   1.9e+03    0.1   0.1     1    12   626   637   626   647 0.70 Leucine Rich Repeat
LRR_1                PF00560.32    23 AT1G56520.1          -            897      0.15   12.6  14.8   3   8      0.71     7e+02    1.4   0.0     1    21   649   669   649   671 0.73 Leucine Rich Repeat
LRR_1                PF00560.32    23 AT1G56520.1          -            897      0.15   12.6  14.8   4   8      0.19   1.9e+02    3.1   0.0     1    13   696   728   696   738 0.61 Leucine Rich Repeat
LRR_1                PF00560.32    23 AT1G56520.1          -            897      0.15   12.6  14.8   5   8       6.4   6.2e+03   -1.5   0.0     3    13   742   752   741   760 0.71 Leucine Rich Repeat
LRR_1                PF00560.32    23 AT1G56520.1          -            897      0.15   12.6  14.8   6   8     0.024        24    5.9   0.0     2    12   763   773   762   783 0.82 Leucine Rich Repeat
LRR_1                PF00560.32    23 AT1G56520.1          -            897      0.15   12.6  14.8   7   8      0.17   1.6e+02    3.3   0.3     1    16   785   800   785   818 0.75 Leucine Rich Repeat
LRR_1                PF00560.32    23 AT1G56520.1          -            897      0.15   12.6  14.8   8   8       4.4   4.3e+03   -1.0   0.0     8    21   874   886   866   888 0.77 Leucine Rich Repeat
DAO                  PF01266.23   352 AT3G10370.1          -            629   3.2e-53  181.4   0.1   1   2   7.2e-56   8.6e-53  180.1   0.0     1   351    75   442    75   443 0.80 FAD dependent oxidoreductase
DAO                  PF01266.23   352 AT3G10370.1          -            629   3.2e-53  181.4   0.1   2   2       1.4   1.7e+03   -1.8   0.1    68   106   554   590   538   626 0.61 FAD dependent oxidoreductase
DAO_C                PF16901.4    126 AT3G10370.1          -            629     9e-39  132.1   0.3   1   1   1.3e-41   1.6e-38  131.3   0.3     1   125   465   600   465   601 0.98 C-terminal domain of alpha-glycerophosphate oxidase
FAD_binding_2        PF00890.23   417 AT3G10370.1          -            629   6.3e-07   28.7   1.9   1   2   1.9e-06    0.0023   17.0   1.2     1    41    75   115    75   124 0.94 FAD binding domain
FAD_binding_2        PF00890.23   417 AT3G10370.1          -            629   6.3e-07   28.7   1.9   2   2   0.00024      0.29   10.1   0.0   154   213   247   307   226   320 0.82 FAD binding domain
FAD_oxidored         PF12831.6    433 AT3G10370.1          -            629    0.0001   21.7   1.1   1   2   3.6e-07   0.00043   19.7   0.3     1    40    75   114    75   142 0.93 FAD dependent oxidoreductase
FAD_oxidored         PF12831.6    433 AT3G10370.1          -            629    0.0001   21.7   1.1   2   2      0.34   4.1e+02   -0.1   0.0   100   143   247   294   214   296 0.85 FAD dependent oxidoreductase
Pyr_redox_2          PF07992.13   292 AT3G10370.1          -            629     0.014   14.6   0.0   1   1   2.6e-05     0.031   13.4   0.0     2    36    75   108    59   151 0.78 Pyridine nucleotide-disulphide oxidoreductase
FAD_binding_3        PF01494.18   356 AT3G10370.1          -            629     0.015   14.5   0.2   1   2   0.00033      0.39    9.8   0.5     3    51    75   124    73   131 0.84 FAD binding domain
FAD_binding_3        PF01494.18   356 AT3G10370.1          -            629     0.015   14.5   0.2   2   2     0.069        83    2.2   0.0   117   179   240   306   228   401 0.67 FAD binding domain
GIDA                 PF01134.21   392 AT3G10370.1          -            629     0.036   13.0   0.2   1   2   0.00019      0.23   10.4   0.1     1    29    75   103    75   134 0.87 Glucose inhibited division protein A
GIDA                 PF01134.21   392 AT3G10370.1          -            629     0.036   13.0   0.2   2   2      0.27   3.3e+02    0.0   0.0   110   159   257   305   249   311 0.58 Glucose inhibited division protein A
Pyr_redox            PF00070.26    81 AT3G10370.1          -            629     0.063   13.8   0.7   1   1   0.00023      0.28   11.7   0.7     2    32    76   106    75   111 0.96 Pyridine nucleotide-disulphide oxidoreductase
HI0933_like          PF03486.13   409 AT3G10370.1          -            629     0.075   11.6   0.2   1   1   0.00012      0.15   10.6   0.2     2    32    75   105    74   109 0.94 HI0933-like protein
AAA_30               PF13604.5    192 AT3G10370.1          -            629     0.077   12.6   0.6   1   2       3.1   3.7e+03   -2.7   0.1     5    39    60    94    58    98 0.57 AAA domain
AAA_30               PF13604.5    192 AT3G10370.1          -            629     0.077   12.6   0.6   2   2   0.00014      0.17   11.5   0.0    32    81   484   533   455   559 0.88 AAA domain
Pyr_redox_3          PF13738.5    305 AT3G10370.1          -            629       0.1   11.7   0.0   1   1   0.00015      0.18   10.9   0.0   166   220    75   128    58   151 0.73 Pyridine nucleotide-disulphide oxidoreductase
DUF4179              PF13786.5     88 AT3G10370.1          -            629      0.18   12.2   0.9   1   2   0.00059      0.71   10.3   0.0     5    37     5    40     2    63 0.82 Domain of unknown function (DUF4179)
DUF4179              PF13786.5     88 AT3G10370.1          -            629      0.18   12.2   0.9   2   2       1.5   1.8e+03   -0.6   0.1    10    57   243   290   235   300 0.50 Domain of unknown function (DUF4179)
3HCDH_N              PF02737.17   180 AT3G10370.1          -            629      0.31   10.8   2.0   1   2    0.0003      0.36   10.6   0.2     2    32    76   106    75   131 0.85 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
3HCDH_N              PF02737.17   180 AT3G10370.1          -            629      0.31   10.8   2.0   2   2       1.9   2.2e+03   -1.8   0.1    30    65   578   613   560   623 0.45 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
NAD_binding_8        PF13450.5     68 AT3G10370.1          -            629       1.4    9.1   5.0   1   2   0.00027      0.32   11.2   0.6     1    42    78   122    78   145 0.83 NAD(P)-binding Rossmann-like domain
NAD_binding_8        PF13450.5     68 AT3G10370.1          -            629       1.4    9.1   5.0   2   2       4.6   5.5e+03   -2.4   0.0    31    40   435   444   420   454 0.73 NAD(P)-binding Rossmann-like domain
#
# Program:         hmmscan
# Version:         3.1b2 (February 2015)
# Pipeline mode:   SCAN
# Query file:      five.faa
# Target file:     /home/z/db/Pfam-A.hmm
# Option settings: hmmscan --tblout x.tblout --domtblout x.domtblout --pfamtblout x.pfamtblout --noali /home/z/db/Pfam-A.hmm five.faa 
# Current dir:     /home/z/src/git/rhmmer/tests/testthat/sample-data
# Date:            Fri Dec 15 02:09:00 2017
# [ok]
