9e4fb85df29e66b7320fd42f3e0c16c1 *DESCRIPTION
67089a29017fca05fd9f91161b49bbce *NAMESPACE
2e58be0694c837c539fc62dee452a912 *R/bclust.R
f2d17afd6d3d7cc5e820824a38930f6b *R/bdist.R
463607095906115d9e3034f0df7a6d88 *R/binomix.R
488ee0b6bcd30c8e1c9ca13ec71adac4 *R/blasting.R
ace00c88d4f461bd4d672d1054c16e75 *R/domainclust.R
60d1f2c85a4edc0c8171c03dde491968 *R/entrez.R
f089111b90c1f0001d3201bc7ed68de1 *R/genomedistances.R
c07677e4adeff51d1b8817020ff8e869 *R/hmmer3.R
f750a5b0f9627ad41bb952d204b0f8c1 *R/mpneumoniae.R
d5230a403fa30ea074fd450a345648f0 *R/panmat.R
f39007765732e0ca38cae9985a11ec93 *R/panpca.R
e3bd9b00dda8b7acee1c6b0cfaacd9ac *R/panprep.R
d6b4a97332cf608fc85f0ab26ff818e4 *R/powerlaw.R
e7e5193098846d665930af80389d09ad *R/prodigal.R
324236314cd10842f855ad81c7a07574 *R/rarefaction.R
71f2e8bcf6b861f7f38670da50b67758 *R/trees.R
1273fb4ff19955e9719fcf353a75255e *R/xz.R
9aff95b675a04bd85bc65e82a5658010 *build/vignette.rds
27e0d62c48e8d2a8e40a9cfdd7d7206e *data/Mpneumoniae.blast.clustering.rda
e411aa6408d2764c771593ee17ce4165 *data/Mpneumoniae.blast.distances.rda
21830d542f21b4e0d8a0566916d05cdd *data/Mpneumoniae.blast.panmat.rda
c4905290d50f478ba1842be49beeb039 *data/Mpneumoniae.domain.clustering.rda
274462f6dd8950d48b7a0f51f5cc86ca *data/Mpneumoniae.domain.panmat.rda
f40eba95b68d2ea6f6dc54c9850a9c39 *data/Mpneumoniae.table.rda
ef5297bc2b6bd88bf4a4bb08b87a5789 *demo/00Index
e5b675227d38ee65e06b93f02c4edb58 *demo/casestudy.R
0a5580398f0c9c934aa49b2cc4a07e8a *inst/doc/casestudy.pdf
86628b8529d7d33b4416812753050e2d *inst/doc/vignette.R
d7a0da32f316e05c0c5b3ad0e082c26e *inst/doc/vignette.Rnw
41a7f85c5de56801eefe896229bc5752 *inst/doc/vignette.pdf
c2e2aa54e893702b7fee7eaa3aea3b40 *inst/extdata/GID1_vs_GID1.txt.xz
b94b12afad2b52d72c957dda7fc97ace *inst/extdata/GID1_vs_GID2.txt.xz
410368087d60547a9be1b23a648094c8 *inst/extdata/GID1_vs_GID3.txt.xz
14e8661209f8f33422a6dbe5970cd44a *inst/extdata/GID1_vs_Pfam-A.hmm.txt.xz
baee34fdbe0e7f0998e97a926fc2dd59 *inst/extdata/GID2_vs_GID1.txt.xz
723884a3b39415b866e2b3bbd4fd50b1 *inst/extdata/GID2_vs_GID2.txt.xz
a24cede8e727934e09a8f8d9df9be040 *inst/extdata/GID2_vs_GID3.txt.xz
faa7831c027058a73afef624eb93c37e *inst/extdata/GID2_vs_Pfam-A.hmm.txt.xz
c387edc84233ada0c2a20a16071858ef *inst/extdata/GID3_vs_GID1.txt.xz
e03bf4297d83a460022067c6a22b9d4f *inst/extdata/GID3_vs_GID2.txt.xz
3f837092a169861c0799ef7115232f94 *inst/extdata/GID3_vs_GID3.txt.xz
dd81e211d6cbb70a135b68ade61135ec *inst/extdata/GID3_vs_Pfam-A.hmm.txt.xz
c7eb733644b2f865e726e134a75d35e4 *inst/extdata/Mpneumoniae.txt.xz
5fec602407bedb646d4dbfa0a89291b9 *inst/extdata/Mpneumoniae_309_GID2.fsa.xz
26c7f2c421ecf44da9df77c8d9219b21 *inst/extdata/Mpneumoniae_309_genome.fsa.xz
4da2e66131e11f857bb552efc01b415d *inst/extdata/Mpneumoniae_309_protein.fsa.xz
84cee4befdaa9d85d21bea47e5eadee8 *inst/extdata/Mpneumoniae_FH_GID3.fsa.xz
9e5e3c2c4b8107a48e052234cc69a45a *inst/extdata/Mpneumoniae_M129_GID1.fsa.xz
6e2129a8c0a7bb98208c15ae25e68e45 *inst/extdata/microfam0.hmm.h3f.xz
705117f4de57c93409b796d5ecf87040 *inst/extdata/microfam0.hmm.h3i.xz
a5e30f1cf0be0e6e345c6b2c5d8018ba *inst/extdata/microfam0.hmm.h3m.xz
7a030a4466834e1e33141b6a0e5506bd *inst/extdata/microfam0.hmm.h3p.xz
7b33a9cef6772a8abf1f005065217712 *man/bClust.Rd
42cfbb74bfa65c9dad1c0e1d96b15b46 *man/bDist.Rd
50d9cc5efa2f3b2cd903809db6f1dadc *man/binomixEstimate.Rd
a9efc014245c230acb7e578788d0aa6e *man/blastAllAll.Rd
22c0ca06159cf36455e297472f090942 *man/chao.Rd
5d64553d5e74da8e5aee8deba31e57f9 *man/dClust.Rd
372a2b87524939a2cbf09136730710b7 *man/distJaccard.Rd
a5a3774337a58af6538b023558c8a555 *man/distManhattan.Rd
5d347b553bb2bc9f51b736bb2151e53d *man/entrezDownload.Rd
e3b43ed49705355d360b10a2d5b684c0 *man/fluidity.Rd
335d2a205c84e081a174faba54c25b93 *man/geneWeights.Rd
a02528c324d3215868eda5e440de17bf *man/generic.Binomix.Rd
e49805db53a838e3107b4df5ae7c928c *man/generic.Panmat.Rd
ad6b635115e1991f0d0a55e83cb0a4a7 *man/generic.Panpca.Rd
a2725ea10abd1c4734d2b9b691ffdff3 *man/generic.Pantree.Rd
a3ab3571facf66e66dbf5fc97742cd9b *man/generic.Rarefac.Rd
791f19465f6fad43f76904e2b4dc2885 *man/getAccessions.Rd
24eb0df515b4fb5c0b5bfb38f266d390 *man/heaps.Rd
1b0bfb269970d1993b21a12f088d2d54 *man/hmmerCleanOverlap.Rd
c55f185c4c6df788302494929e0298e6 *man/hmmerScan.Rd
71ea8df6e2731653dcc338aa9bfe77ef *man/isOrtholog.Rd
e2bf82c691067b4e30022365566a9464 *man/mpneumoniae.Rd
6e476f4da5dc08c154411b21252711b6 *man/panMatrix.Rd
df7791df84989e253672a2baab1d2a17 *man/panPrep.Rd
2c6fa2238a0591e34b701b1c91e8aea4 *man/panTree.Rd
ccc9ff3da9e25fda43e78497140ecb68 *man/panpca.Rd
407646374d00154ae495efad1030baf3 *man/prodigalPredict.Rd
770e4a06af1a15133cdadae3f2e904d9 *man/rarefaction.Rd
409926cba4d6ec655f2c88440ca84f55 *man/readBlastTable.Rd
40350bdc296ba7f2d2b377dd004d6c16 *man/readHmmer.Rd
c89440408d05ab1f24e2ceedd0c61bf2 *man/scores.loadings.Rd
eb1f75cff1e3049d749490d2817c7400 *man/xz.Rd
d7a0da32f316e05c0c5b3ad0e082c26e *vignettes/vignette.Rnw
