130944d26918d4aaddd43ce4572acddf *DESCRIPTION
7bf1ccc26e5826ec963a19aff15d41f7 *LICENSE
03fd70abb1ea10eda3be5eae2f0132d7 *NAMESPACE
cea5feaba3b0dc5c5c10c1a0492229f6 *R/EMM_functions_cpp.R
fdd6c8337d500a5bae4c2f8d31c7e3d8 *R/RAINBOWR.R
c30cb3966070d3c8717f024e400292c1 *R/RGWAS.epistasis.R
fdfbb6466a9b05baf65dcf71c2cfe6b6 *R/RGWAS.menu.R
8585ea57f30a22ddc8ff8cfc5595f2df *R/RGWAS.multisnp.R
60950b67a9e736650572d92152e005f7 *R/RGWAS.normal.R
9a82cc69ef6836e2fcfcda02f066527c *R/RGWAS.twostep.R
b68b640d636c83672b614dbbf8da8533 *R/RGWAS.twostep.epi.R
3fae5741e4163d2d13f86d81133eed70 *R/RcppExports.R
35b871b4a75d438a181cc4c4732d1a2e *R/Rice_Zhao_etal.R
df429b1913154d233f3ccde96623eed3 *R/Rice_geno_map.R
03df50ec745fd846fd1c3436f17e0419 *R/Rice_geno_score.R
33af6bcfd26b3b7e49dc438e5bfacd0c *R/Rice_pheno.R
7acca99cc2290afda93a0763a6da54b3 *R/SS_gwas.R
9b97590b60fd00a964a2be47ef7d8a62 *R/examples/EM3.cpp_example.R
3df82baa6009015ba4dff0b1799d7978 *R/examples/EM3.linker.cpp_example.R
dafe1a0242a0820776889449aa0d4a52 *R/examples/EMM.cpp_example.R
fcba17dcffdb4563990bd43a15bae876 *R/examples/RGWAS.epistasis_example.R
b625f37ac05630ddf3c6f49369b43e8b *R/examples/RGWAS.multisnp_example.R
e6abf93c434503993ebbb6495989f5da *R/examples/RGWAS.normal_example.R
c402b876091746cf8b2c80f260410a8e *R/examples/RGWAS.twostep.epi_example.R
1d340f4dc8c5dfd31ca360af69177ee5 *R/examples/RGWAS.twostep_example.R
3f888858e2988eb51df40e5b00c13e4d *R/functions_for_RGWAS.R
b45abaa301903fc2d5125b79eaedc93b *R/genetrait.R
7b10a305b4b893d24dc4953faf3912c5 *R/other_useful_functions.R
03592d6486edb4f48b2932cde18bb90c *README.md
bd74eddc2b61fcb8a9e77bf16e54cfde *build/vignette.rds
31348c29e4ffc7dc523c4248f3df0b72 *data/Rice_Zhao_etal.rda
7c22e8bd5c047dad605d2b0b401627ba *data/datalist
8eb3b4de1fea9417be9185fd741eb1da *inst/CITATION
294ad88111e44f74254ee87b0cc9fab7 *inst/doc/RAINBOWR.R
99d12a14b25e247310f1b041f87e2bff *inst/doc/RAINBOWR.Rmd
2062d1bf3bb78368c95d547c01ace8cc *inst/doc/RAINBOWR.html
fc43588133c424a67ff4d5ecce2267a6 *man/CalcThreshold.Rd
08c401b3780e635a979adb4bfbcbffbf *man/EM3.cpp.Rd
9d130f9be92e8378c98204e86ef26363 *man/EM3.linker.cpp.Rd
61cf86443e0a06098fffa8fcf573d0a9 *man/EMM.cpp.Rd
f4ec0186b3887064bda4a61d70c67123 *man/EMM1.cpp.Rd
a3623fabb2886c582e12f83f5d5df0ba *man/EMM2.cpp.Rd
619c5254bb6d054c931231378e944a5c *man/MAF.cut.Rd
ba3a0e0937895b07ea1469925a20ee38 *man/RAINBOWR.Rd
1011fee3ce7e36e7e723c55e2d2c0af9 *man/RGWAS.epistasis.Rd
3f95c1d135bbc3b48bfdc72b5ea1d29b *man/RGWAS.menu.Rd
cc2ba95d7cd658261b8732b59d171864 *man/RGWAS.multisnp.Rd
016059831ef8d6eb92c8497d948157fc *man/RGWAS.normal.Rd
ae664ae1e55500164d81c15c2c2b334f *man/RGWAS.twostep.Rd
4742a4d68b9c2140d4b0d7d9b624177d *man/RGWAS.twostep.epi.Rd
8a75ad127bf208835910f6af27b91b1b *man/Rice_Zhao_etal.Rd
104280b9bc00f590a0b6d39269ec45f7 *man/Rice_geno_map.Rd
a610b5f25f78bc03fde6365a61fbdff0 *man/Rice_geno_score.Rd
6aff726f13a3be7a488fbbc9968f12c4 *man/Rice_pheno.Rd
5c0cc8dd69a4669ffc72f6b14de59863 *man/SS_gwas.Rd
d2b00bec97db2b56e92e856810f46543 *man/See.Rd
b82b49da99fb39158681e76c67291ad2 *man/cumsumPos.Rd
00ee68461661141ac35c2337d0f8749a *man/design.Z.Rd
98a2236786c4cd5653728c53ec102fd7 *man/estPhylo.Rd
1b5d7658f519b40d0a72e724d94a20a8 *man/genesetmap.Rd
a9ef38c6addf5ccf046eb46441f3cc6a *man/genetrait.Rd
dee7b90441aa20d5a7c84f0d09a377ad *man/make.full.Rd
f8cbe5a273a9224bcfdf28ad16e9e5b4 *man/manhattan.Rd
e495937f8a4a321a219fa6aa80cb7a8b *man/manhattan.plus.Rd
edaa5b668ae14353ed1f245f5b746920 *man/manhattan2.Rd
f751c85890b99c9101bc072ac261791f *man/manhattan3.Rd
d3bfa0bc2a7eb245148af48ca0b01c7f *man/modify.data.Rd
98440e83f68a599e7a9532ba64047e1c *man/qq.Rd
4094d3c814c62780076326fdf5977cec *man/score.calc.LR.MC.Rd
5dfb6262b8e170c0baa756c118ccd50f *man/score.calc.LR.Rd
51fc7f9ad10be433de40e89328804520 *man/score.calc.MC.Rd
769361cdeadf4f2a667ba8e9484f75b9 *man/score.calc.Rd
e5646a5372647945ca5ea7e796f3accf *man/score.calc.epistasis.LR.Rd
d5f8440d3f77017acbe63fe5e0996ff1 *man/score.calc.epistasis.score.Rd
e195df6d96e39fa6f1c73377bf7b7ef4 *man/score.calc.score.MC.Rd
5b028e09f36caa805cc983d189b562a8 *man/score.calc.score.Rd
f31871427ffdd3f28545b5415dc0b707 *man/score.cpp.Rd
31dfb8875ad37cef92160006fedac526 *man/score.linker.cpp.Rd
e873f84a702fefbf62d55501935fac10 *man/spectralG.cpp.Rd
360bba514cc60960abf248914906903e *man/welcome_to_RGWAS.Rd
9c749f17a28fb67dbb09e49ef70dc35d *src/EMM_functions.cpp
c50d9de009861bf6f34426d4f654120e *src/RcppExports.cpp
99d12a14b25e247310f1b041f87e2bff *vignettes/RAINBOWR.Rmd
