RM = rm -f

all:	sweave stangle makeRfiles pdf

sweave: 
	R CMD Sweave Manual.xRnw
	 
stangle: 
	R CMD Stangle Manual.xRnw
	$(RM) Manual.xRnw.R

makeRfiles:
	cat ./figures/CS1--Cs1_Exercise*.R > Case_study_1.R
	cat ./figures/CS2--Cs2_Exercise*.R > Case_study_2.R
	cat ./figures/CS3--Cs3_code.R > Case_study_3.R
	cat ./figures/CS5--Cs5_code.R > Case_study_5.R

pdf:	
	cat Manual.xRnw.tex > Manual.tex
	rm Manual.xRnw.tex
	texi2dvi --pdf Manual.tex
	rm Manual.tex
	make clean

clean:
	$(RM) *.log *.aux *.ilg *.ind *.idx *.blg *.bbl *.out *.Rout *.toc *.lof *.lot Rplots.ps Rplots.pdf
	$(RM) *.tex
	$(RM) ./figures/*.R
	$(RM) ./tex/*.aux
	$(RM) ./figures/*.tex
	$(RM) ./figures/CS*.pdf
	
