87b5e89e12d7f73f3c44825558bb7819 *DESCRIPTION
bc6dc567e323431fe65668a75863c4e8 *LICENSE
26ec8c66ea9c61152c7b65ff7a4e8a15 *NAMESPACE
5c193066fb3f7cfd32adddc5df90da60 *NEWS
8b4d9fd0e8e733fdf76526c9689163f4 *R/AlphaSimR.R
8659ce4816a3766a1b2cc51814efd74a *R/Class-HybridPop.R
f061aef29824f8e39d0fe7d43daa4af4 *R/Class-LociMap.R
d6ed5eda2e94ac7be4cc89754858752c *R/Class-Pop.R
08f0d20d5f1a217017d1da36b06c6e19 *R/Class-SimParam.R
d682e031dd8aa8a2ad4d9e78c1bd9e07 *R/GS.R
bd53c0ce1ab94f953f6d9e5226f1fa8e *R/RcppExports.R
1be5ce7f785dd9402488e168212f0e2b *R/crossing.R
e399bcd3d7bf94087fb63edad1ce5f0e *R/founderPop.R
9b0a9420fb15f9d73f2fcd8137431baf *R/hybrids.R
b68a69990a1d9399a9e2cc154927a63b *R/mergePops.R
32b26d7305437f7edfa8c39323702eef *R/misc.R
02a5599ae7df384eeadca8046b99ca10 *R/phenotypes.R
308ce45d82220b51804c3ab839b09e6b *R/popSummary.R
8699e4f10093f0a3415ec31d88b176d0 *R/pullGeno.R
f32ae91a57644f7938c7341c541fb127 *R/selection.R
6867b1a85517896e1c8169138c3d8919 *R/writeRecords.R
f3d1494f9cb97b34864b1b6ffc4b0ade *README.md
684beb74fd8a66a90c4a7daf725361f8 *build/vignette.rds
c56d8dd12a1bd0477532f17dcfbff0c6 *cleanup
4fe28a8960b3f873d0b853c1127022d0 *configure
cbc30c3bdb80a0ba152033e4d689da20 *configure.ac
7d2cdf2acda9b9fa1fa09c8fe3c13142 *inst/doc/intro.R
d64370a166bdb7aad330521c0635a90c *inst/doc/intro.Rmd
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95347352443f738b4bc47a284afe4cfc *man/SimParam_setGender.Rd
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9d67d3dea8a516cf3df611f463e38290 *man/gv.Rd
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93b33ad601e6c78eb4af800722a8a4f2 *man/makeCross.Rd
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1197d8790fe2c2ce80a2ba90b3f368c5 *man/meanG.Rd
6a7988b3d377a691fa42fb932056156d *man/meanP.Rd
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8748a0734fa05837da542f4068995721 *man/nInd.Rd
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9a3954e7784adfd4c539f5bfbf5c1660 *man/newPop.Rd
3ac7726e85db9634e347ca70f1a9e026 *man/pedigreeCross.Rd
3a22bd04002fa459703faafc9e54c4c5 *man/pheno.Rd
456e31e7d92ef0cd2418028e322f301a *man/popVar.Rd
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1272ce29f3c6f38190f92283d052ed00 *man/pullMultipleSnpGeno.Rd
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1a24b4f17353ef2d9c46fb6590849f4d *man/pullSegSiteHaplo.Rd
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601cb055d67cf8e8609ed4d190731b75 *man/pullSnpHaplo.Rd
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9bf205d228be8275a992669ae139855f *man/runMacs.Rd
777d2a610fb60f123ce25d38c2bf76ed *man/runMacs2.Rd
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3ced0e8684550b59bd5263140abef7e5 *man/setPheno.Rd
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8aa528591ee30195624b74ecd3544083 *man/smithHazel.Rd
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b73359161d900fba45407f0ca08f3d68 *man/usefulness.Rd
3de2c81c763d94741a26c964abfb24bc *man/varA.Rd
08d8292cc66f4f0ca147d31b9fdf074f *man/varD.Rd
1e15e29b4a0afb2bbb2b080f20cc34b2 *man/varG.Rd
ffa793a62b26b0b34f210bedd05d7f3c *man/varP.Rd
10196e444497f3876711b0862d14226b *man/writePlink.Rd
1974a164c4d9477a89b8eb40d1d9d24a *man/writeRecords.Rd
4a188f6f5de63e21fc113939522fcdf5 *src/GEBV.cpp
8c7d6cea155b89e829c1a8f8b69a1997 *src/MME.cpp
8538ea3f1a25c4ea2751911e6b2f15ac *src/Makevars.in
bee230df6ebea3196c0fe754585c486a *src/Makevars.win
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54edda62673404d4e1619c64bf1984b9 *src/alphaSuite.cpp
4b54c16debedbad102578715356a59c6 *src/alphasimr.h
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00147893071ebe8d2b13a813649e72da *src/getGeno.cpp
8a55c25bcfb4e51b7845f31f16916c54 *src/getGeno.h
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d29cb5766429b6f107e722f6acb6f3cc *src/getGv.h
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8cc86c3b3ddc537960a16c2b556b96a1 *src/init.c
1a394d43d1415547f6b51759156b6ab4 *src/meiosis.cpp
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8cfb221a11ceff8d16f639bfc40d7376 *src/optimize.cpp
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85c5466d7e98701f4a2b98762fefeb3b *src/plink.cpp
1ac2ade8317a6480ef58cc4322f0c7ce *src/simulator.cpp
ab2471403bb60203f733aab07cda83ef *src/simulator.h
5efd88db47a2ae12fa63852d00527e24 *src/tuneTraits.cpp
4f73537cef0969345caec0e220f40246 *tests/testthat.R
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9fece24e786cb99d083ac07c48a210fe *tests/testthat/test-editGenome.R
5e82c3e4ab2c1d9351172818d5bf1364 *tests/testthat/test-hybrids.R
00b8896df01ad62151adf7ccb8ddfc7e *tests/testthat/test-ibdRecHaplo.R
5012f419d470d6b08ebedda893cf41f4 *tests/testthat/test-statistics.R
99c25951014e3aaa5b43f90d15273327 *vignettes/bibliography.bib
d64370a166bdb7aad330521c0635a90c *vignettes/intro.Rmd
