e1cece4e8513aa01f00ada67fe48a3d8 *DESCRIPTION
1c5fb114d46fa0641b61b07ba8530259 *NAMESPACE
e494549e7278e68b0d0335d2bd886333 *NEWS.md
db7ba51f9c19b4c982607734daf9c9ca *R/HMMplot.R
a5213fbc85c01f25c9e2ba1a1757542a *R/RcppExports.R
f978e13e72f0d019967bd6b140bf63f3 *R/SSPlotter.R
1bf692644be52ea79814933c419803c6 *R/biofam3c.R
b00aa2725efdab1fdfe16a57c0e11f23 *R/build_hmm.R
d60e7c4a34adaf7f363621e23b9c7d56 *R/build_lcm.R
f0969e4bac67dd70c7ad0bf3cc4e5206 *R/build_mhmm.R
4232c6e18ef61d8db4ea338fe462bb44 *R/build_mm.R
61adcdf1c01a39d7c99c22a6485f461b *R/build_mmm.R
c57088eec2ae645eb7fdbaa032620a48 *R/check_deprecated_args.R
5713b633d5ff958034e3fc672549b4d2 *R/colorpalette.R
c501731291a9aa14d341e60442cbe0fd *R/combine_models.R
979aec74efbdacd9b9abfe7d658cb0ce *R/estimate_coef.R
38c84fee8b253bdc6c86a3abab618f68 *R/fit_model.R
800812905769a74d2d15f963b34aa021 *R/forwardBackward.R
d33e9108378183dceef249afd8aa21c9 *R/gridplot.R
53ec420d5ee944f3ff15cd0b10e94607 *R/hidden_paths.R
e9a202767bc83aebed76a38e87798dfe *R/hmm_biofam.R
ab2e784177d1d691fabad95439319d17 *R/hmm_mvad.R
496c8ac7809e2bac50d5a43cf376288e *R/import_seqdef.R
f74304ca8e2fb06d5934ee83bc8638ea *R/isColor.R
4bb7e5b0375c0522589eac22399da722 *R/logLik.hmm.R
8c19128629ef3989a691ff9403bb9d4d *R/logLik.mhmm.R
aec5ed442b0c4643f5acd5c16a52e0b6 *R/mHMMplotgrid.R
399675fa3ced2bc8150faf424e9e38f8 *R/mHMMplotint.R
982436a14dae3c5dfc1b6be0b2d1b473 *R/mc_to_sc.R
360c359f97d4f3bb0bf02e02676eccb1 *R/mc_to_sc_data.R
f678fdd2298abadf0ef822e95f1ba3cb *R/mhmm_biofam.R
d3982e5832836ccf9c5cc1fbc22f96db *R/mhmm_mvad.R
f3dfe871838dacb09376e14d4f5855b9 *R/mssplot.R
c880f30685dc485bde121e4d5de8964b *R/plot.hmm.R
9846448a6aa5f3a53ef773f2f51ae1dd *R/plot.mhmm.R
9aa6e2ec1701a9751742f19d4671829f *R/plot.ssp.R
01aadc3edf15fa027e5786dc5a219cc7 *R/plot_colors.R
4e9cbdd59c6a045ed3d4cdee6c0f5019 *R/posterior_probs.R
1b34a268e69de66c179193c1d15896ab *R/print.hmm.R
bb251626065bd2b982524ff6fc10ae59 *R/print.mhmm.R
1ee30703cd7779651aecca4dcb10a181 *R/print.summary.mhmm.R
b132037d5958d8f623d81b9eb56250d5 *R/separate_mhmm.R
3afdbcedddea2a60142d90f99511e0b0 *R/seqHMM-deprecated.R
419dc95e3d1dcb7e28fc44f508b9801e *R/seqHMM-package.R
f3c09851e5256bb46561267738ddb941 *R/simulate_hmm.R
269678c8ad8b91adf3f821223c318c37 *R/simulate_mhmm.R
18794c287dc840452d948e9ae372c225 *R/simulate_pars.R
d89f049fad615c06487b2f3ce9056d37 *R/spread_models.R
addbd3670e85cc42617d0e9f2664a95c *R/ssp.R
12b314bc787a556e1a05c994d78a6107 *R/ssplot.R
3f88d77c39dc280e6111711c513e80dd *R/ssplotM.R
9436feabbdcc5d2a701449aa8c68ac77 *R/summary.mhmm.R
0a8f8d4c287368444e0ac6bb418bed01 *R/trim_hmm.R
b3707ff2f8a3d3060d4accd5ca5105fd *R/vcov.mhmm.R
e3617f64f12a489e36796531d4e563ca *R/zzz.R
f61247ad7f11cf4af06623fef9fe70d1 *README.md
95ecefde0b6531eebca526c8360478c7 *build/vignette.rds
24d8098b9e16c0fd497d674af8c740c9 *data/biofam3c.rda
07df3b55fd8db67073a1d34aaa35630e *data/colorpalette.rda
dd187977cf5880d446b623d1c8982a88 *data/hmm_biofam.rda
fd3c82e79109fd44a48e6d07597f4d19 *data/hmm_mvad.rda
57777ad97b24b5d51d3495527525dbc0 *data/mhmm_biofam.rda
3889dcd736e00a5e199e246dfc5a2f9b *data/mhmm_mvad.rda
a7dfb24678b528104a1c9ffcbd5c5533 *inst/CITATION
2f4ae01045429ddd142c20d752c213d7 *inst/doc/seqHMM.R
31eac5d44305b254512bdb18f6059eb5 *inst/doc/seqHMM.Rnw
59e93213788228c29a5ecdfa695df8f5 *inst/doc/seqHMM.pdf
09f6ea92004d7de6775f0f05ae68cd78 *inst/doc/seqHMM_algorithms.Rnw
aeb303d7688d09d97c8e162f4b1d7285 *inst/doc/seqHMM_algorithms.pdf
d45d8583fa944e84271be94f4cc31968 *inst/doc/seqHMM_estimation.Rnw
b69d31a99a9ffed8dcec9d81cd434263 *inst/doc/seqHMM_estimation.pdf
939dc60709f4a9f76b262aad9b4df2a4 *inst/doc/seqHMM_visualization.R
f20eec12cd6f0cfdf24d044e7eb77d51 *inst/doc/seqHMM_visualization.Rnw
da98ad1d8fc28a6f27557d1b8c3ece50 *inst/doc/seqHMM_visualization.pdf
9477110d68145142c20f2ab11bf297ea *man/TraMineR_imports.Rd
189f32ff57cecb50c5b8d0c5ca3948e6 *man/biofam3c.Rd
ef5c2212ca6871115a355fd8c4825763 *man/build_hmm.Rd
564bd5373b4fd2cfdbe972a6512f7417 *man/build_lcm.Rd
a5efd5387e49027dfa4c65e23f4a0147 *man/build_mhmm.Rd
9e19ba33dd056f4e279bb82cb75ebe32 *man/build_mm.Rd
fd455a6ac1d7755f03228f0c51f5f69a *man/build_mmm.Rd
b1855cc07a3d6257195ade23f72f04fa *man/colorpalette.Rd
ec2c0d32cb37a7b9ca23e8514c26c385 *man/estimate_coef.Rd
4429920a7be4c59489b7c48f18ef85f1 *man/fit_model.Rd
c308c4973ad612b976d5b395f0fe78d3 *man/forward_backward.Rd
15dbd9514e67e085d239bafc8726d85c *man/gridplot.Rd
112d58c60f6f680bb87c451d09c8fef1 *man/hidden_paths.Rd
8023c82044e776c4ba32fe5fb8c73897 *man/hmm_biofam.Rd
e497d7e7f0c29e4b3545be2b3305ea3e *man/hmm_mvad.Rd
b0690e16918203639f483436a1bfc980 *man/logLik.hmm.Rd
50578c90dcd0d9bdc37b4102a9625f0e *man/logLik.mhmm.Rd
14d29b10cd858fc68f0cd2e13d571424 *man/mc_to_sc.Rd
b8e0f21d484585b2275ad2582a3049ee *man/mc_to_sc_data.Rd
a249ecbfd42b330abb844864caae5796 *man/mhmm_biofam.Rd
ab25a1ecae179b190841b91d84a1bcc3 *man/mhmm_mvad.Rd
50ec894ab6227e4a7a54521e797d36f6 *man/mssplot.Rd
a549a5da99aab7d349f0fd399a775268 *man/plot.hmm.Rd
f011ce01f12995d842b074654c48aeff *man/plot.mhmm.Rd
d99d3c57499922e13425b5463d3064b0 *man/plot.ssp.Rd
f3f60ede91ccda6e8947a087ccb706f5 *man/plot_colors.Rd
5a48d900f9ee95f0496ac643260519d1 *man/posterior_probs.Rd
44ef212a26347c232c55df8df564860d *man/print.Rd
2289e69113417bdfac4439e59989806a *man/separate_mhmm.Rd
78ba71178479b630fd3f45e9f97eb24a *man/seqHMM-deprecated.Rd
411e6598f0070bbc989709ff77b614f0 *man/seqHMM.Rd
8fcdd9576616f157b0054f8b47fa1642 *man/simulate_hmm.Rd
917457f274d3350fac5da21a0576083a *man/simulate_mhmm.Rd
72e26b15159f3f5d27eaf3fc7bde1680 *man/simulate_pars.Rd
f7baa7c47a1da971e2f3402ac002c8b1 *man/ssp.Rd
5a4e2455ed53deb52961db49b3139b94 *man/ssplot.Rd
16db9d96e07caf6f65656fa5fd8b1619 *man/summary.mhmm.Rd
cf295d882058470cee378711adb80b5f *man/trim_model.Rd
c9d6d07756dbfce183a803b33f5053f0 *man/vcov.mhmm.Rd
abbea2e6d30e17313fae6ca5b9685e9e *src/EM.cpp
9f75cc8c7ae5eae68635b031b5df24b3 *src/EMx.cpp
9ae100fdd0b23ebcdaefe1704a0077ff *src/Makevars
bd61dfbb5490959bd4d40fbfd415489a *src/RcppExports.cpp
20c1252bca0be69e1de313a28e55e834 *src/forward_backward.h
ec0f7a7035dbfd7e1d96ff4a13ca1830 *src/forwardbackward.cpp
3f79087feea85b300ce72675d7b4c8aa *src/forwardbackwardx.cpp
0447b58a8a9e79a15a602263b3528b49 *src/internalBackward.cpp
124765753caaf4109ac6afd0df7ea4e5 *src/internalForward.cpp
fc106ba3b4db61b0b0307b19c7026262 *src/logLikHMM.cpp
7624b73a47eb901e5d971799aa7453a0 *src/logLikMixHMM.cpp
1de322e9a6a19c621424830e192b2658 *src/logSumExp.cpp
e5dd4ff915ca102f056da95770a872fa *src/log_EM.cpp
06e8eac89672611cbb07b15b334917d4 *src/log_EMx.cpp
4484c730f61a62737e2ee613d9b821ec *src/log_forward_backward.h
9e368f98352ae5b21b040b5c7dc2bc1c *src/log_forwardbackward.cpp
4110cbd2c915840b8c7ec797b31f333e *src/log_forwardbackwardx.cpp
9f2a3798a1c8ae8283f5519c53831668 *src/log_internalBackward.cpp
ea2592a72a6f94c6b5a8c29bc1341ff2 *src/log_internalForward.cpp
f9373bd8928d57b8c46808acac881240 *src/log_logLikHMM.cpp
266a2c281514dde17739b33567a8be19 *src/log_logLikMixHMM.cpp
cd838496924c19ac10e79c5605c30712 *src/log_objective.cpp
475a6bc4ee0d052be36afcdc0e24822a *src/log_objectivex.cpp
2195a382b632d022ee0d23f7c2f59d59 *src/log_optCoef.cpp
7621a0c59fe10be93c3d0138953e1e9f *src/logsumexp.h
1b75a0e5d8d767659a06a1fb4d83bf5f *src/objective.cpp
321faf04af33ba8e6cac3233541a1fd8 *src/objectivex.cpp
ddcbb8c3fb87bbedec50c733f29d9360 *src/optCoef.cpp
3e0a6f1b95933f128a1c818c9d24a1a5 *src/optcoef.h
df8bbdce2e4261696bf145f8e561a4f6 *src/reparma.cpp
b7005c66c1530bd3e0761c5e50db2121 *src/reparma.h
8854aeb61de442d9e2eadb5f6647a22c *src/sa_opt_coef.cpp
299120588f91cf4eb31737f4b6f039e1 *src/seqHMM.h
9726182edf6db7d7697a8c65a5995dbd *src/uv_forwardbackward.cpp
47b684c7b2f2cb87e271a8ad9b4bce8c *src/varcoef.cpp
845ee1e5b0703dfdaa79cef03f7204e9 *src/viterbi.cpp
bb3602bc32ef536424511175aa46d72d *src/viterbix.cpp
9409935bf052c81ec19b23b287d5a1e2 *vignettes/mhmm.rds
f052d06b1b093c29c7b2ae76badedf12 *vignettes/references.bib
808839ecb28de32f5910652fd02af020 *vignettes/references_for_vignettes.bib
cfb349b85f34bf64a4f07deec793b951 *vignettes/sc_fit.rds
31eac5d44305b254512bdb18f6059eb5 *vignettes/seqHMM.Rnw
09f6ea92004d7de6775f0f05ae68cd78 *vignettes/seqHMM_algorithms.Rnw
d45d8583fa944e84271be94f4cc31968 *vignettes/seqHMM_estimation.Rnw
f20eec12cd6f0cfdf24d044e7eb77d51 *vignettes/seqHMM_visualization.Rnw
