d4b9c2df23717c0cd67d05d7bb44b692 *DESCRIPTION
7a98dd2612d6724d9d5b3b1a946565a5 *NAMESPACE
d76f2d29110c1ee975b54a0d618d644a *R/PTM_MarkerFinder.R
5b8840cb519e2d80d0b18a8f24047cf9 *R/RcppExports.R
edb55dbf703db5095ca2da3acd2b1510 *R/aa2mass.R
e474472ae1e9a38ba5d12c4f45fda68f *R/de_novo.R
2ba4ef134407d04e229bed9ae53977ec *R/deisotoper.R
937beeab4ef1e1d9df1a207cf53b801d *R/findNN.R
ad0034a3915cc450245ee0272afb6283 *R/fragmentIon.R
451317ef11b6a2f96b8694a36552047c *R/genMod.R
383914886d1596b45fdde36cd38553ce *R/iTRAQ2GroupAnalysis.R
93c5f4f5632186564153d385761976e5 *R/lcmsmap.R
4665dce0b3962a239eeb2f0d75636946 *R/mascot.R
6842712841339c3928f48636f8e54f7a *R/mdp.R
a952cd0c2a2c62d02c60c0a76e57f455 *R/parentIonMass.R
96490f71f61d99033a164f8360ff0773 *R/peakplot.R
ccce09b58042b0a7a96eda5b59d4b845 *R/pepxml.R
c36eba240126b1af709dad766791c406 *R/pgImporter.R
15ae159f85652a791453d182cc29bdb6 *R/pgLFQ.R
1bdb82885d61c7ee79332a277f5a2220 *R/pp.R
ca35c56c0c379f292f8fab68b3a19f61 *R/protViz-package.R
0214245abfe46ed9ac5ba350fe494ba6 *R/psm.R
220f466e4dd6aa4c1aa8ee6891a9b2a1 *R/ssrc.R
7593968ba9533e62fd8c752f2a8c01bb *R/sysdata.rda
453599cfa3c359046e3e78e0c569ed99 *R/zzz.R
2a544c83cd9477f15df16d76c7c855e1 *README.md
9dfa1538b28d27de318f9ea26542892a *build/vignette.rds
a4b835997fe3fe64238836eb5d979742 *data/AA.RData
a7d9cde11a9f003614841335f8e079e5 *data/HexNAc.RData
ce174ecc08dde8c7e9a20f639f366228 *data/averagine.RData
d508e0a9c898d0ae1334844776f38a24 *data/datalist
d587791a5c9d55fbf7a618be3d5cc75a *data/fetuinLFQ.RData
601922c525f1b02d7f3c2a3b33a43ba5 *data/iRTpeptides.RData
bf9c18b97846ca3619b7ceb5b2e46cf2 *data/iTRAQ.RData
8450919282665051d39daabe6aa183a9 *data/msms.RData
40467c3fd4bcc9388f58320db2e6a94d *data/pgLFQfeature.RData
d25756525079de04b8287ff934c8bd5a *data/pgLFQprot.RData
c234dff499abc2d9f61c97e3d7c4bf40 *data/pressureProfile.RData
daa9c303936ebe822c0bfbebf6bd6733 *demo/00Index
d553d739fc6b78566ed04444d0a461df *demo/PTM_MarkerFinder.R
f45c1b16c999f2c36134eecadb373909 *demo/peakplot.R
e8e6de925245a465d2ac421ee0628597 *demo/pressureProfile.R
cd82da9cd5a71337020cd26e87376f2c *demo/quantification.R
2e96a497a8a8a6c6f07acbe14f30ac92 *exec/protViz_annotateSpecLib_with_protID.py
670d6468c76929c27cc04bea7df18825 *exec/protViz_annotateSpecLib_with_protID_split.bash
006d9ad3aca2c547707fb572255bb9ad *exec/protViz_bibliospec2RData.py
386ed045a439e0339d35262e9d719450 *exec/protViz_dat2R.bash
ca2fe9383a60b3c8a0d63481dbf38f9d *exec/protViz_extractPressureProfiles.bash
6e56290871832dfca27d85b031322397 *exec/protViz_fun.bash
e987214b38889ad6721a30fb45ef3979 *exec/protViz_mascot2XML.bash
7c4f3c80da1c09aa515923b10fc65776 *exec/protViz_mascotDat2RData.pl
a27b5f3973e06451937cd65c378100cb *exec/protViz_mgf2RData.pl
47fda600631ed89310aced77dafe7878 *inst/CITATION
08d138ae6eb699915e169bf84192a420 *inst/Dockerfile
5fbab87704a55e8d66f3838eb3fcd484 *inst/NEWS.Rd
e85378d46d53cef915deda4e811cb929 *inst/doc/PTM_MarkerFinder.R
8e96b4045bf90e93f87708b74887fd99 *inst/doc/PTM_MarkerFinder.Rnw
bd30be9f7a85eb17cbad14caa0f6fa71 *inst/doc/PTM_MarkerFinder.pdf
3a0278d9395c8073a5860ff4e8d68f1b *inst/doc/poster.R
8834a1360e70b9d1741f338b0cf4b5b6 *inst/doc/poster.Rnw
a1e7bad67dddc24077af39b47bf42b70 *inst/doc/poster.pdf
244e489b30c4dd9f487a84623e4bed4a *inst/doc/protViz.R
241ede81997acd9955dafbdb0bc243f9 *inst/doc/protViz.Rnw
fb39b613e71224ec3d86ecfe87294d2f *inst/doc/protViz.pdf
e47ee9f6542f2ffaee664e2d649cc401 *inst/extdata/P12763.fasta
4a55f4abeb61c0d63ed5021ce15e03f2 *inst/shiny-examples/PTM_MarkerFinder/ptm_marker_finder.R
a292341302241cbf4ffc1c19e8851771 *inst/shiny-examples/PTM_MarkerFinder/server.R
7e8f140f1fd700e80d4df94cbf8bce91 *inst/shiny-examples/PTM_MarkerFinder/ui.R
00c79a56ca84e078a881b0f83872f0bd *inst/shiny-examples/peakplot/global.R
c842585df78eafd3aa6d7da07bebdd04 *inst/shiny-examples/peakplot/server.R
2dbcf913fcbba0e31480b14447b181a8 *inst/shiny-examples/peakplot/ui.R
43e0ca2ed4068a2e676d87103611deae *inst/unitTests/test_aa2mass_main.R
77ec94c4f0e76139a081e98a27a1c5fe *inst/unitTests/test_aa2mass_main__verus__parentIonMass.R
160cd629849a1f616b961a0c51a9555a *inst/unitTests/test_deisotoper.R
d3f4b8cacddb8d8ca9e2f4a7b9b5f24a *inst/unitTests/test_fasta.R
8020a898ae401e6604de8f22f669597f *inst/unitTests/test_findNN_.R
b3fd9b4c5437d1b6e94e66176440d0ac *inst/unitTests/test_fragmentIon.R
3e54b239107ead34b9c31ad712f05c44 *inst/unitTests/test_psm.R
673d3bce87aca3d55d91658956a5fb21 *inst/unitTests/test_ssrc.R
a71db823deaf03d66d90ec09e791af74 *man/AA.Rd
7c991c49284819c1e7e26fb98c8fdd50 *man/HexNAc.Rd
80a8597c9269a28dec428c005e85b5ea *man/PTM_MarkerFinder.Rd
23b1bc60ffd8529d3e8041b787656e99 *man/PTM_MarkerFinder_util.Rd
43308db08c425924502856cec0ab200c *man/aa2mass.Rd
489d35474a3d7cada544fe83b0edcee4 *man/averagine.Rd
b164fa16c5abdbd02328de98905ef623 *man/de_novo.Rd
73f831a090be3033cd3a452a44067663 *man/deisotoper.Rd
d5c50c59995a6ba1d0c6f610e5393e09 *man/fasta.Rd
3c477aea308fa209761c7c17456624b8 *man/fetuinLFQ.Rd
45b178532559394dc9fca95eefd3cc48 *man/findNN.Rd
ff3e29d47f56b0ab6762318195c910ca *man/fragmentIons.Rd
3f2228152c2bb7caff29ea9e450bd78c *man/genMod.Rd
17dfd02637a460a2a333f75ca66e594c *man/iRTpeptides.Rd
2e31ca5b84385e4b4f73073444a22cda *man/iTRAQ.Rd
c849ce9d6aaac21264721286b0a618b1 *man/iTRAQ2GroupAnalysis.Rd
9ed87aaeae888c99d5ad34b893bdd6e6 *man/lcmsmap.Rd
4abb0c7e7eafc955212120755c911cb2 *man/mascot.rd
71c22b57ffb7789db6cb367f1e084d80 *man/mdp.Rd
3fa37904e15542a9d8047313c354b249 *man/msms.Rd
fd75f35f293a0e62ec5a2831daa3fe95 *man/parentIonMass.Rd
aae48947dec22afa73453ab2b2de1157 *man/peakplot.Rd
a41003b07860d285e922dfbfaded7fff *man/pgImporter.Rd
94216a2c8bdf765e9c6a2acb305101cf *man/pgLFQaov.Rd
90160c4ae4961414e36744d72b8f83bb *man/pgLFQfeature.Rd
d5868088a1788699f969461527899b27 *man/pgLFQprot.Rd
57487772317b6f64a97db714173e7cb4 *man/pgLFQtNpq.Rd
8cee211c76eec2b80625377908f9316f *man/ppp.Rd
e73d6869e195acbe8c372b2213772f3c *man/pps.Rd
4ca6d1cf44e7392671a03781f3887f2f *man/pressureProfile.Rd
e2fd6497f006c1236fc15809e5a45996 *man/psm.Rd
6428b161f724f4d700eb7e6e128f3767 *man/psmSet.Rd
94a4430ee28b2091305d735a831b9763 *man/ssrc.Rd
91da86e0b1c7b772b649841e3cbdc3f7 *src/Makevars
37c32a94db70d3e4cc5b77ce8792449c *src/RcppExports.cpp
95839cb7a54933126578c8e51313b81a *src/aa2mass.cpp
7ed16d8640f6152e015319c911fb3a07 *src/base/chemistry/iisotopeenvelope.h
efae8513d316cc1b04f373bb921823cc *src/base/ms/deisotoper.h
77986b618519e5e1c413a7bca8040378 *src/computeFragmentIons.c
53b2688824c377621e1b8ae2b24afcb4 *src/computeParentIonMass.c
9007e5c3aba69100c454693baa6ff556 *src/deisotoper.cpp
a8d7cf74f972a23cb003880b0b219ace *src/fasta.cpp
77cb4156a7e582e8756f0888f8e266bf *src/fcat.c
08a003e33d958ec8931094bae2b8da20 *src/findNN.c
ed9d181a227a62876570b7a7be5c7324 *src/findNN_.cpp
2e35dea87627fbfa4bbca0cd161be4d8 *src/protMass.c
9e97bdc56ad6b63317b2fdf415ab59e7 *src/protViz_init.c
75f3ba46f2e925198b12edf3a8d73f5d *src/rcppdeisotoperenvelope.h
42adb67f2cafa7634115ec6edcb8454d *src/tryptic-digest.c
e588ec0224c1f42429555e1958365ff8 *tests/runTests.R
8e96b4045bf90e93f87708b74887fd99 *vignettes/PTM_MarkerFinder.Rnw
a6354dfd36a92d4cf246a3c9df060205 *vignettes/graphics/FGCZ_Poster_Header_2014.pdf
8834a1360e70b9d1741f338b0cf4b5b6 *vignettes/poster.Rnw
241ede81997acd9955dafbdb0bc243f9 *vignettes/protViz.Rnw
88cd17c0e97a2926bebbd7e2e80c117d *vignettes/protViz.bib
