499e7f6e6513f63946d0c8e37f3445c0 *DESCRIPTION
ae8f7c7754a2cd2d7bf6fdd315b511a4 *NAMESPACE
491c4b9148db220bfbd4915ef7a37b50 *NEWS.md
2180b88a6a7841891ce5c4efb2ab830b *R/RcppExports.R
57c1cf70b3a93fed451a69791a9f91f5 *R/cache_twopts.R
e20ee50b105b66ac7b1dd93cff93e87c *R/calc_genoprob.R
7fc7471945feab2983593ba4f302a50f *R/calc_genoprob_dist.R
62be31aa287f6e44bb5691780cfa828f *R/calc_genoprob_error.R
14735763dc218c0e9fd8d3ec3b601367 *R/calc_genoprob_one_parent.R
5daee8660c1665410f1d3efdd2e3f894 *R/check_phase_configurations.R
4c1bac32b20c907045a0adca575c36da *R/data.R
92ce45e2f1c9fe39802d5b5e08f00fef *R/eliminate_redundant.R
82e7a0e19a9ca3e5bf52479a1bb4ae1a *R/est_map_hmm.R
e6f5c358841815a9b415b1627d717119 *R/export_map_list.R
9a9ada13a4dd76b142b738223733fd85 *R/export_qtlpoly.R
8e581c89cbfcb83685c83090039249a2 *R/filters.R
ff1ab49722111fe1ceb4bf12ce91d80d *R/get_counts.R
d6339748af5fced121276946385e927c *R/get_counts_from_web.R
9f0bf97e74a918e18562b8c7f67e2547 *R/get_submap.R
1b25a36d93f99d513faaa3ce3f31a097 *R/group.R
4dcbc927657a759c79b69d403cd385e9 *R/haplotype_map_utils.R
8c7c672215845b6af975ac1d81fd62f3 *R/homolog_probs.R
5233026150e0444ff9f52d12bd23ecf5 *R/import_from_polymapR.R
95035f21dcd7ff57615c7593538fa867 *R/import_from_updog.R
52f5cd64afd9bc4e3ed74b2f05cef689 *R/loglike_hmm.R
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92b221f188089ed62010e728c7023790 *R/make_pairs.R
126faad15af41db09c9fc54c820138d3 *R/make_seq.R
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7857d318048c1c5587d67e2abf24e874 *R/mds.R
725cc9bd3857abbc921f29fcafd5a158 *R/merge_maps.R
ce2c9bd0f5d3220263f195a831e9f88e *R/one_paprent_single_map_hmm.R
4b62f568891b87350ab8acab7da1ad1a *R/pairwise_rf.R
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91bae68aacfdfb53d14e9cc64ba2771c *R/plot_map_list.R
44f9e2a03365343f80064122f4628158 *R/poly_cross_simulate.R
1a35154544c42d1719c0943691a4ef4a *R/preferential_pairing.R
f8acf559b5f889133fd2cb5824e1dfb8 *R/prior_dist_hmm.R
6e14ef648c5cf6db44a47768e01074ff *R/read_fitpoly.R
50d16a3beb671601bf0a892cbf134e3e *R/read_mappoly.R
fd35e93feaeea60fa6a88f6ea3904349 *R/read_mappoly_csv.R
0a8cc165d4c390e7b32f156819e653ba *R/read_mappoly_prob.R
f531622f123b4fceb731e5cf8f2ed307 *R/read_mappoly_vcf.R
6959df61d2e27a1f11dcbcd1ce6006f1 *R/reestimate_map.R
540962883bf7be9381160fe506a32ef9 *R/reestimate_map_with_global_genotypic_error.R
a391e82000f07a5388a9b1f87e0b147b *R/reestimate_map_with_prior_genotypic_probability.R
d74411b68a921ce37dd5bab386f6d30a *R/rf_list_to_matrix.R
e17127a83a3b32f8d189c0adeec32156 *R/rf_snp_filter.R
e3aa6b5a269ace5a10943e0f1cf0dfd8 *R/segreg_poly.R
6b66cdebce255af8c4aafc202910528d *R/sim_homologous.R
5b212f70cebde273959b01fcd1a9cf53 *R/simulation_utils.R
ae3d761401043aef9e262770da72e648 *R/single_map_hmm.R
dc27666d17759906a5f969cffb4b0b14 *R/split_and_rephase.R
832c75429daf8edf90c02a3558f58b12 *R/sysdata.rda
aca87bb8560c0dc1d280c88b61e38605 *R/utils.R
aa86ca784121b3c34d851c6ca341efe4 *R/zzz.R
e948752fefa361a3283436921fa1da0a *README.md
0c6ad5b3446721162c89589e8077ab1c *build/partial.rdb
64a260088e5277d16e06334a5e736f14 *build/vignette.rds
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acc914fb6d346f8304405ae7c3407d8a *inst/doc/mappoly_startguide.Rmd
63eef25719de18adf853b06408746653 *inst/doc/mappoly_startguide.html
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