347dbc755c38fcb398226c2eef296c3a *DESCRIPTION
a03f8330bb0dbea90c154257793bf8bd *NAMESPACE
c32274b747a0f79e239cfb762bc823f9 *NEWS
a06324534c6c10c46a9f44ea9700fb68 *R/bm.r
3925e520f0834502e07562a0c33fba82 *R/bm_as_bm.r
8c8960d9225b37c27f676aafd50c58b9 *R/bm_bind.r
30b03d7a1192118338a560c014acf1f1 *R/bm_files.r
54f0dac3fb4997eb8292a3f66d4aba06 *R/bm_genomic_sex.r
2b735009e07be11a1b5d92613a6eabdb *R/bm_grm.r
8f729a4c26842185d9d0abbec0eaf530 *R/bm_hwe.r
e7281d851c2404f68d42e7835f3cb2c3 *R/bm_interface.r
28e301c98f12574d20205cc605f298b5 *R/bm_ld.r
5b964dbeca9439c887c5e09222d2b775 *R/bm_ld_thinner.r
4689a74a9e175dbf117d494724a80da5 *R/bm_merge.r
08cb391db13370b39361e3bac9b8680d *R/bm_product.r
4896bd6bb9cf7a38350c4c86c41d2e0b *R/bm_select.r
09a4c16400d9bcac0bcdeba50b614b9a *R/bm_stats.r
655221dd6a2bd19a0204bb2db658181b *R/bm_subsetting.r
bd50097a1e8b63770b4a30e6350aaac1 *R/bm_vcf.r
88b17613eea8cc209f7617cd0b131b6c *R/gwas.r
d9bb4417ae676ca14497f0c754b8d61f *R/ld_plot.r
0512ed98107b5664b2513f1b1b0a018a *R/lik_contour.r
68c7a9422d658dcfc9cf59ae72a52d4a *R/lmm_aireml.r
e20a72b79ff112e923e8ef350ff004ea *R/lmm_diago.r
51f8c7826ae4401b3daaab8440139698 *R/lmm_diago_full.r
0fb0f7222ab7a4a9252c94b7dbf609f1 *R/lmm_simu.r
73e68023e7df6552c36c532623f5c88a *R/logistic_mm_aireml.r
6dbddbe2a33bcb1ed29d27969f5124f1 *R/random_pm.r
be28b697d241654ffbd360a73c4281b9 *R/score.r
82b8dcf26bc848f1f2b4fbe9bae5ad78 *R/zzz.r
7a4d7a6ffc0ff19fdacef27beb86f8bf *TODO
57a4709b04af572b2aa247788f858b75 *build/vignette.rds
3596d85a370f43e3e00ac131fbbbf95c *data/AGT.rda
34e12c308b68ce8e6ffaf071af82af7c *data/LCT.rda
28e30890deb426c070776d01a1320d49 *data/TTN.rda
abf8652f46e0022f2cd2b5ff8efd424c *data/datalist
1e8deb3b00066e321cc9b4ca28355c95 *inst/doc/gaston.R
315caf51471852663136495fe855762c *inst/doc/gaston.Rnw
59e0dccfce54f66037ffdd2292972dd9 *inst/doc/gaston.pdf
12c31f58f990024d8b77c3b0c9dc86cc *inst/extdata/LCT.bed
2273b75e59551e464ae55f404d2887ac *inst/extdata/LCT.bim
3b1a418c594a35920264a5743580180f *inst/extdata/LCT.fam
91e0aa603c29eb463fe6dbefd9383834 *inst/extdata/LCT.rds
0f25ffbe7be484c3f88c85c89af8c39e *inst/extdata/LCT.vcf.gz
3ade457b2b3cdef6faaa05968fc49d42 *inst/extdata/LCT.vcf.gz.tbi
80c6a9e575bb3038aafd512a85290e08 *inst/extdata/chr2.bed
97078f282b05f0a6ae30948bcece2470 *inst/extdata/chr2.rds
5efaccd09ca97939175014cca9adb565 *inst/include/ai-reml-1k-covar.h
1a02a163cf05248bc155227335e88260 *inst/include/ai-reml-1k.h
5908e189075bd86441789248917cb75e *inst/include/ai-reml-logit-1k-covar.h
f76675b2c996c91ae1a7fbc3c657421c *inst/include/ai-reml-logit-1k.h
ac288ae310e60602322145fccb12e707 *inst/include/ai-reml-logit-nk-covar.h
6403c7a5da49b0a60d048fbe1cb00446 *inst/include/ai-reml-logit-nk.h
bd83fd3dd89cac441da5f3ed61963ecc *inst/include/ai-reml-nk-covar.h
6ff1e50646f6573f6a8de97786526d40 *inst/include/ai-reml-nk.h
80ba7fcaecd0962a0bfda28ef34199a4 *inst/include/any.h
f706984f78ec545f9a2e448afe9dc6b4 *inst/include/diago2.h
6de842318c40111958537bcae48203ec *inst/include/diago2_full.h
c450c708312c2d077789aa6bec0b280e *inst/include/diago2_full_nocovar.h
4fa633844b67d18859ee1fde9e9ab5ed *inst/include/diago2_nocovar.h
e8eadd7e57d38c8299154bdd2e809c6e *inst/include/gaston.h
cc2564fcba9de9494f62f2897b7b38a8 *inst/include/lmm_diago_min_max_h2.h
50695e43c414ed9e75d5c84f12d28434 *inst/include/logit.h
522dc155a95ed07a304d850b5846a4cc *inst/include/m4_kinship_type.h
e4bd8556a7e5a7947e596ab86c7b4374 *inst/include/matrix-varia.h
ce592b0410487ba40ca4cf56f2467a4b *inst/include/matrix4.h
60d5eb22e16bdf18424eaa173c21c266 *inst/include/optimize_2.h
1d858fed609a26fe339055ff358cdcfe *man/AGT.Rd
4a03496bf029d2dec45f8115f9553cb8 *man/DM.Rd
a66414797044e2ae323f55fef21d391a *man/GRM.Rd
82fa8049e96f840b0ff07a0525355af2 *man/LCT.Rd
379c3c9cc71d6772b4e9e3b19e6547fd *man/LD.Rd
b7d65c241854d99c51ef457246437d99 *man/LD.plot.Rd
fdd73d323e295f63ea96da17802aedf3 *man/LD.thin.Rd
9840358e0ade1e6ac512ed1377c8c77b *man/TTN.Rd
d45b95cd8d2b78772208789a108a811d *man/Tests.Rd
00d8064525f1cc07a3d1ce6fd4e73b86 *man/as.bed.matrix.Rd
83253d66ce9f89ed43686351e2ce44b7 *man/association.test.Rd
b8b95a75ddfdae381405166a843d647a *man/bed.loadings.Rd
f49c3589a104631d3de5297cac8f621d *man/bed.matrix-class.Rd
f3a481f9b037894d68f166dda2e17b0d *man/gaston-package.Rd
9b52418e99720f5ea352b2950135871f *man/is.autosome.Rd
cb91f55c7b6c8f11b4b43d7d239a494a *man/lik.contour.Rd
b32618d2d9607956ffaf69e94462006b *man/lmm.aireml.Rd
ab1d95969c7b4d6d25358321ad60c297 *man/lmm.diago.Rd
ae049e156dda5ca5039c9d47b49f3b4a *man/lmm.diago.likelihood.Rd
f5faee6732a25028e896865eb64a10f6 *man/lmm.simu.Rd
5062450a5a28428be1442a3bc2f934b4 *man/logistic.mm.aireml.Rd
04601d6eb9adc1d9e4c8470f0d3460e8 *man/random.pm.Rd
a921d410f8365b1b6f75953d85e3fc9f *man/read.bed.matrix.Rd
e22ec915539da08c16640f60a7338bbc *man/read.vcf.Rd
0abcea9ecf5eb5225f5e3d20bbc2f3fe *man/reshape.GRM.Rd
6a15a1682c303fb5083ce37dac0b5846 *man/score.fixed.Rd
981eb5f7ab89440fdf243985e9598a9f *man/score.variance.Rd
a7e32adc080001aded909617c2d561c0 *man/select.inds.Rd
959bffa32e3cf77017c769785bc075f2 *man/select.snps.Rd
9789cf44ddcecaad9df17d4b6ec24799 *man/set.genomic.sex.Rd
671cb542ef1024b8025dee620e60cb33 *man/set.hwe.Rd
37f701a7dbaa4a2f5fbcf2427834007d *man/set.stats.Rd
224ec8d1d59b0fe51513cc4bd25b075b *man/write.bed.matrix.Rd
a67154331c58b2a5f796201cab0e7c8f *src/Makevars
5efaccd09ca97939175014cca9adb565 *src/ai-reml-1k-covar.h
1a02a163cf05248bc155227335e88260 *src/ai-reml-1k.h
e6693119ee0ddd97b6304855795d5691 *src/ai-reml-logit-1k-covar.cpp
5908e189075bd86441789248917cb75e *src/ai-reml-logit-1k-covar.h
f76675b2c996c91ae1a7fbc3c657421c *src/ai-reml-logit-1k.h
ac288ae310e60602322145fccb12e707 *src/ai-reml-logit-nk-covar.h
6403c7a5da49b0a60d048fbe1cb00446 *src/ai-reml-logit-nk.h
bd83fd3dd89cac441da5f3ed61963ecc *src/ai-reml-nk-covar.h
6ff1e50646f6573f6a8de97786526d40 *src/ai-reml-nk.h
80ba7fcaecd0962a0bfda28ef34199a4 *src/any.h
28b689c2e93135ba0f61b7ad28c508d5 *src/davies.c
f706984f78ec545f9a2e448afe9dc6b4 *src/diago2.h
6de842318c40111958537bcae48203ec *src/diago2_full.h
c450c708312c2d077789aa6bec0b280e *src/diago2_full_nocovar.h
4fa633844b67d18859ee1fde9e9ab5ed *src/diago2_nocovar.h
0e62f29818cd0de6db499adf432c9574 *src/export-aireml-1k.cpp
16eda4e91765e9fbc2d50d608798d953 *src/export-aireml-logit-1k.cpp
953b74db74a93a311eb7076441d170bf *src/export-aireml-logit-nk.cpp
4a207bb541281d771203daa64f2bb2f9 *src/export-aireml-nk.cpp
cb3eea1aa8a4f97a2d9665aac1326c83 *src/export-logit.cpp
d1ecace2e4fca9e26c0589a9f30fc90c *src/gaston_init.c
2d832c93123c5afe0797e4671881e17c *src/gwas_lm_quanti.cpp
0ea43cfc5d611f7785b196726aff8fbd *src/gwas_lmm_diago_lrt.cpp
4c3e0946317bd2932a97d30c4d6046ec *src/gwas_lmm_diago_wald.cpp
d3987273178a33c8ae578ef0ac6c2f22 *src/gwas_lmm_score.cpp
b6f20d00e9df91dfbe9fa12add5c0de8 *src/gwas_logit_wald.cpp
a83c55932898100c475a36bf312f451e *src/gwas_logitmm_wald.cpp
5b5802c73341407e7107dc262bc22880 *src/gzstream.cpp
99d59b3af2c3974f943e118556645888 *src/gzstream.h
599456c13a04482724b77500c2085e67 *src/hwe.cpp
eae04c0f6a28040448ae30dcab55af52 *src/hwe_chi.cpp
2b39e959a989f84c56318ba1897b7229 *src/isnullptr.cpp
6eb6f2898faeab0a9718cdf28346d430 *src/lmm_diago_fit.cpp
b1d6e3d9acc7b064ba6b6e7f131b7ddd *src/lmm_diago_full_likelihood.cpp
6d0694708a7f019dbc44b41eefe3d411 *src/lmm_diago_likelihood.cpp
aa38ad1bd59b8bdfd4c0ab698799acc8 *src/lmm_diago_min_max_h2.cpp
cc2564fcba9de9494f62f2897b7b38a8 *src/lmm_diago_min_max_h2.h
50695e43c414ed9e75d5c84f12d28434 *src/logit.h
e085288dc7c7b0f0f9621658a441ba99 *src/loubar.cpp
40d0909be4391dbdad8048fff47af3ca *src/loubar.h
4063e860069e882e362ffee0d5a24d99 *src/m4_bed.cpp
6fa444d58421026fd124d3d38830120d *src/m4_bind_inds.cpp
ca518453f7274adfe90446df16a6be01 *src/m4_bind_snps.cpp
79b271d525ceb558eb1cd23714a189a6 *src/m4_conversion.cpp
26132f31bc8a5ac45df90f06a97f2598 *src/m4_dims.cpp
66e5154e20098e447f1eecbea3d006a9 *src/m4_exports.cpp
add3241ccec1f7d1b12a9593c875c2ac *src/m4_extractind.cpp
0580d39e033d34b6cf0be91cb6d14c53 *src/m4_extractsnp.cpp
78fa9f5a962c0fef42924503f61759d3 *src/m4_kinship.cpp
ce9c4b5ec9c48930febbda5ae3e49e3c *src/m4_kinship_p.cpp
522dc155a95ed07a304d850b5846a4cc *src/m4_kinship_type.h
d59ca25223bf6ac4ff1a656650d929c1 *src/m4_ld.cpp
4116f2ea39de0d15ad4bfd8d7ba2be2e *src/m4_ld.h
993dc08d8fa6735d5ee802e3b70dd2ea *src/m4_ldp.cpp
1b249cd98d2a5b8d397a1506d8683ea6 *src/m4_ldthin_left.cpp
1eca108c0a249bc2e69b87ca251d0632 *src/m4_ldthin_random.cpp
918b7ab345eb45166ced30136f2f0f1e *src/m4_ldthin_right.cpp
c580bcc45cae89d59c462cb0c1e6b4e0 *src/m4_prod2_ms.cpp
53a49d588502a546b7cb78d555252810 *src/m4_prod2_p.cpp
11b9b5a4d0de9a0287539df71046dac5 *src/m4_prod_ms.cpp
3a957fa4e9a9f9386f3b2e261f87e47e *src/m4_prod_p.cpp
3856f815df29bf6eb5a50eef5ace261b *src/m4_read_vcf_2.cpp
dad3b3b6c0abdfa653f7860aac22093a *src/m4_recode.cpp
a42b81fa6570d4bc307b6608bb224259 *src/m4_stats.cpp
5dac904d5ac666a2279ac48d5aa31a9f *src/m4_transpose.cpp
d529e19aec8f225ada3435c709d48d22 *src/matrix-varia.cpp
e4bd8556a7e5a7947e596ab86c7b4374 *src/matrix-varia.h
b0c288b8ea7c21ca08cab3282254f871 *src/matrix4.cpp
ce592b0410487ba40ca4cf56f2467a4b *src/matrix4.h
60d5eb22e16bdf18424eaa173c21c266 *src/optimize_2.h
e6092bb5851fb0917c0c2f94bbe00e99 *vignettes/gaston-015.pdf
3236dd86250750d05ef8a98a5d4fd47d *vignettes/gaston-016.pdf
4ea89399fff71fced94011d820f0afbe *vignettes/gaston-026.pdf
fe80636c8fffeb110e58bef771592b26 *vignettes/gaston-028.pdf
12327ecc06f3a6fff676fad6e26f70e1 *vignettes/gaston-029.pdf
68f7ee66a2361c2fa09caa50c15b32d7 *vignettes/gaston-030.pdf
f16587ea70e1608237828322b30ae64c *vignettes/gaston-033.pdf
48543d5b0b68a5dfe4b2e73bc842325a *vignettes/gaston-037.pdf
04644942ad45917637694f1f5f2a4f65 *vignettes/gaston-039.pdf
1ca12f58b2d7806b4b8b994ad971a276 *vignettes/gaston-040.pdf
8665ec9aee3a714469b63329c1846463 *vignettes/gaston-041.pdf
e032d2259914cf38a7cfa778f1249fe3 *vignettes/gaston-042.pdf
2c40554d02b21903ef75031898db564b *vignettes/gaston-044.pdf
3117a22a680f057d8f938f94a38b58fc *vignettes/gaston-048.pdf
d6309d883f9f249f211a4845935da9d3 *vignettes/gaston-052.pdf
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a688edd0be1180f822b08c59ceee0628 *vignettes/gaston-054.pdf
3dac48c0ee944ade7e1ac1f00fb21a52 *vignettes/gaston-055.pdf
ea8636f028de6cf5fb63b7e65c542a28 *vignettes/gaston-056.pdf
315caf51471852663136495fe855762c *vignettes/gaston.Rnw
