7ad59b5c0c87258862c57263131428d8 *DESCRIPTION
eb7de3721b58031d133fdbd7f65b568a *NAMESPACE
261a5cb1c3f99fcf5258fc00581d1782 *R/DataApes.R
010b92b31a817997550d2fff8d6b18cb *R/DataCetaceans.R
cea3aeb7ef747aa571e2c309b99f95a5 *R/DataFelids.R
d182a526e84a62e41a886c4c89d43f5e *R/DataOrnithodirans.R
ea4b95f23b3f67a1db24a706cf470a15 *R/DataSimians.R
3c0e43736f7574e5966d51c1bfe8b381 *R/DataUng.R
8eac209faf9e1d4375da9aa089a32f96 *R/PGLS_fossil.R
3552629a0fb2f4c62ccc841d6526ac8e *R/RRphylo-defunct.R
121cd5d4ce1e1082cc0373a651148039 *R/RRphylo-deprecated.R
f2ab4a0232d86d8773a7463233e14389 *R/RRphylo-package.R
1c94eb7473335caafb4d42330a7b24f9 *R/RRphylo.R
5a1a2f263afa9691d7b5b3106363eaf3 *R/StableTraitsR.R
8c8d0fafc26081d7c15391f84cad94de *R/angle.matrix.R
c992365837ea4796e34b11379263441c *R/auxilliary.functions.R
8472fb86a15e68ca23abd6e0da1a7c5f *R/conv.map.R
2a115301bf00b78db0cfb1b75e6c2f70 *R/cutPhylo.R
948e5ca0bc512d28e149f0d964b02585 *R/distNodes.R
94e54d9f615f4e11b2ebe37b4be167e0 *R/evo.dir.R
c5cebf676f1d8e4a6deda9c4758252e3 *R/fix.poly.R
d74c12760256d02fd5f50fc376769273 *R/geiger_functions.R
ea087f890b34d2c3f9a011e0dc4cc564 *R/getGenus.R
76a2531713a821f1df9167dc4fe8b0c5 *R/getMommy.R
fc0fc5afcd9980f55059621a2d881e86 *R/getSis.R
c56ce93a9f5d2d1611c6d8bec249afca *R/lollipoPlot.R
46af091949640773097927ceeacb8722 *R/makeFossil.R
0bc3966138cda517b44bf28655eba140 *R/makeL.R
6ff1f5574e540674bc45a77047145656 *R/makeL1.R
fb2f6958bd9fcecf46cbbb067b36f99d *R/namesCompare.R
c8ea04bc0ce5272b1510374ba1668a15 *R/node.paths.R
921cb5edbebad874a6514fe4755b8ddd *R/overfitRR.R
66dc12f6515ccebafc7f4fa8d5b5a568 *R/phyloclust.R
dbaf7962c9f613aac4226b03eaccda6b *R/plotConv.R
ccc03dae1a49c691d4b5bcab5671fc2a *R/plotRates.R
4a5278eebab2cfeda2c684d83c71b022 *R/plotShift.R
dc666badab5194660414bda1158dff4d *R/plotTrend.R
f0ad47166a30c002aa4803f6d22e22bd *R/random.evolvability.test.R
9394754db1c0f00e6d5e1522bca3a2da *R/rate.map.R
987b7daf132f4d6d419e9c03da0b04fe *R/rescaleRR.R
0c483efb976591820c987318d194ba8d *R/retrieve.angles.R
5070b598b523ac5899291a503b4b5828 *R/scaleTree.R
ff71e2f9e0e095015d52ff420af79c48 *R/search.conv.R
2df9235cb28512de7b667e295c390cf3 *R/search.shift.R
3791f9b9898cbdc665002c31daff974b *R/search.trend.R
0e13234268335238ded4858dc735bfc8 *R/setBM.R
d76bfcdb7d3f8224226032dbc634b915 *R/sizedsubtree.R
5878a41266ce0336c809ad65bba78c43 *R/swap.phylo.R
77e517b8ecf28eb96cbc3d25bf6db9b4 *R/swapONE.R
2cdd113b1c45801fbe3b259020eb5b0f *R/tree.merger.R
6d7117eb88e426d63abef41e5df49fee *R/treeCompare.R
a87ca38420c20324db0e7c56f6860382 *README.md
db7455336df17223f941d9128658daeb *build/vignette.rds
3c3127f2d5d42c3912d57742f834a285 *data/DataApes.rda
8f95ad61fa098a0312f427dfd081a94d *data/DataCetaceans.rda
fca9800a2683faa2384620e5c1d69467 *data/DataFelids.rda
ca1f8209c9fbef21c62244b04b7dfea2 *data/DataOrnithodirans.rda
07f781c6d41cbfe4cc6d7733bc4474c2 *data/DataSimians.rda
5944cb20f016659dfacf56bc485c6c27 *data/DataUng.rda
2b4408ef52b07d489429b687817c8d7e *inst/CITATION
4c6ef01996af518ec9ba013a9b90cdc6 *inst/doc/Plotting-tools.Rmd
8aae1ac945d028672221710c0801a3db *inst/doc/Plotting-tools.html
d59c8c8ef96b4d9a4a918ffb0b3ff1d7 *inst/doc/RRphylo.Rmd
12e9b1cfe3a270441b0ac42c774ebfc0 *inst/doc/RRphylo.html
7f24aff760a52880c883320de28d0130 *inst/doc/Tree-Manipulation.Rmd
05b05364f1b2b495c3facc1ee6309c71 *inst/doc/Tree-Manipulation.html
56063d4aad12af640e4f60512050e0bb *inst/doc/overfitRR.Rmd
6c60db5051a31bc0250a37d591809738 *inst/doc/overfitRR.html
5e38c57f5c6243414443176775d62685 *inst/doc/search.conv.Rmd
e78d4b4cb9e422c0452dad70ec042ef4 *inst/doc/search.conv.html
d25416d92c51dec19f415c7e5a249c28 *inst/doc/search.shift.Rmd
85fa4425eeb1ed187e8b64d56a6ea237 *inst/doc/search.shift.html
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4c940dc9c9d7152cf5c485057b9842b4 *inst/doc/search.trend.html
90f35e6b7bcfeaafd68ef0dc8e155b3f *inst/doc/swapONE.Rmd
ae4c0576f24e10d24cb7844a419a4ea4 *inst/doc/swapONE.html
cf85045a804de3a4a47e510e331887d1 *man/DataApes.Rd
8a33c48eda456d4fb64cd196831aee46 *man/DataCetaceans.Rd
de67ca56336b6f560839fc0d29526667 *man/DataFelids.Rd
f592999474d4737c21f59575ac556652 *man/DataOrnithodirans.Rd
a847da11baa26e542ebbc453389dc0c5 *man/DataSimians.Rd
427d06e83f321e383d0769484de0b08d *man/DataUng.Rd
e8b33e66eeb7827bf00bb9512fcda6c6 *man/PGLS_fossil.Rd
62df4959b47ea744b6364e4665ad6932 *man/RRphylo-defunct.Rd
b1c00ca093e7f3477df3255244cf9522 *man/RRphylo-deprecated.Rd
8cf785ac2c9bf9b8a60648de1bd6ade7 *man/RRphylo-package.Rd
b25f728da1f7cb6ebf21fa5ba690deaf *man/RRphylo.Rd
49bad362f5c536eaa1deff9a14383650 *man/StableTraitsR.Rd
b20f26a1bba2858e9de4d41f0b62b610 *man/angle.matrix.Rd
aa092b9b0c6af34c775419d11cdad596 *man/conv.map.Rd
3020eca694278e01db7336fe3bce2623 *man/cutPhylo.Rd
bc18f45c9d57c19cb6a5b02a3517c00c *man/distNodes.Rd
a8020baf596868d2ba052076aab27967 *man/evo.dir.Rd
37444eeee82979c338b0ca1426dcb127 *man/fix.poly.Rd
9ca5465eec8d533851b84bd6a9c00118 *man/getGenus.Rd
0325923641b041c9f46d03921f403816 *man/getMommy.Rd
87899a18538b1d7934f815cec9ac60e9 *man/getSis.Rd
f68c9adb5983c38aa85579ed17a18ea7 *man/lollipoPlot.Rd
aae4e8bf77e5564046bdbf0a533f96b1 *man/makeFossil.Rd
81913e50f1d7c91185b865fcd568692d *man/makeL.Rd
6a4c51d45eaeafa62532e307d6fde604 *man/makeL1.Rd
372a8972ff82a0f272cc307e9bd5cf33 *man/namesCompare.Rd
ad5478da4ef06a25e497601bb1e01724 *man/node.paths.Rd
e15aa0d3fb4cb76c857ae161c656a73a *man/overfitRR.Rd
498bb61484e16213807837e834669e9c *man/phyloclust.Rd
7cba1724d6b947bb6d6e81959528ba6a *man/plotConv.Rd
f6fe13218975e619ddb378b6659ef839 *man/plotRates.Rd
bc77dfadc435c00442080cdf6da70be5 *man/plotShift.Rd
b1d0a2bdf0198d03aaa609a2aa93172a *man/plotTrend.Rd
56d71cc4fc75670a896facd9f398a7ad *man/random.evolvability.test.Rd
95eb749cd20482a7bf7bea0caee53d80 *man/rate.map.Rd
00b64b3ed58038ab61a3a3cffda5e32e *man/rescaleRR.Rd
3e82e176936cf8da68a1bcae9cb70ecd *man/retrieve.angles.Rd
35f01f38b3559d5d6b51749c618c9648 *man/scaleTree.Rd
a2e976576720ed7046bc1080cc881a1d *man/search.conv.Rd
eb624607a5520e80be9ac5f733c5207e *man/search.shift.Rd
35f5e7a6f638ff5861b2a83a7d6cc329 *man/search.trend.Rd
67a7a6a3b82f3925225ae856c98a7f9f *man/setBM.Rd
737548319aa720170216af41bab7d377 *man/sig2BM.Rd
031b461db3c0b2ef60df70493f756434 *man/sizedsubtree.Rd
769ae1945ac9614d74b7a6a4e1f20943 *man/swapONE.Rd
3bf180593c8c003ae40a08848e378450 *man/tips.Rd
e88b6b440262b23143e5d0de6c587c9f *man/tree.merger.Rd
41610d2be938b69b4bc18e7d52f3fd26 *man/treeCompare.Rd
e94ca5fa189c621ffa8c1047169942e0 *man/treedataMatch.Rd
4c6ef01996af518ec9ba013a9b90cdc6 *vignettes/Plotting-tools.Rmd
d59c8c8ef96b4d9a4a918ffb0b3ff1d7 *vignettes/RRphylo.Rmd
7f24aff760a52880c883320de28d0130 *vignettes/Tree-Manipulation.Rmd
56063d4aad12af640e4f60512050e0bb *vignettes/overfitRR.Rmd
f54943a4df2fc1605ca516e52c121d4a *vignettes/plotting-data.Rda
68d170da42d6f1c1f33d7a60eda02ad3 *vignettes/sc-data.Rda
5e38c57f5c6243414443176775d62685 *vignettes/search.conv.Rmd
d25416d92c51dec19f415c7e5a249c28 *vignettes/search.shift.Rmd
096a55ad928740ba93eeed74a2231b55 *vignettes/search.trend.Rmd
1988c29ffd2dbd78c8f8e55415c2add9 *vignettes/st-data.Rda
90f35e6b7bcfeaafd68ef0dc8e155b3f *vignettes/swapONE.Rmd
