b2866c47e83980538fc2e1d3568f9a56 *DESCRIPTION
4e5cce78a9add52d91d6154b4cfc9f45 *NAMESPACE
b7f8876f976cbc9ec1adb08eaac3ff7d *R/Mode.R
f5fa3bb76d15afb7021468ac00ce8f57 *R/P2C2M-internal.R
76722a0d04653b61d531a0476e940d40 *R/calc.gsi.R
febf50b6a0d385ef668fbc52735301a1 *R/calc.gtp.R
7c724701ee9314f7e4aa197d82a7f8b8 *R/calc.ndc.R
7460b6f79f1f7ef6757a92482accb0c0 *R/calc.parse.R
059294ad3b12266c197c408e076f0622 *R/calc.ray.R
27eb397e34e9b769800fa0837c6e111a *R/calchelpers.brprob.R
6978df06a2cae20cffe7ee3b62b5baf0 *R/calchelpers.descend.R
9472bb8bfc91827cc1b770bc5a58c989 *R/calchelpers.dmvparse.R
dea46985de7632916d028a15082157f4 *R/calchelpers.gtreeparse.R
473447fc4332d32616889bf7891d708f *R/calchelpers.nodetips.R
c7c2bb49abb3a11473ce72621dbfb254 *R/calchelpers.probcalc.R
1990939745b73c7f4c4a89346cc912bd *R/corehelpers.metrics.R
956226eac495a007a57d79e17e1bb465 *R/corehelpers.repl.R
078fac0d27b6bf931d109cf707841ee5 *R/frmtMntse.R
3abde4611d388461c7c9e40f6ba9c1ec *R/is.character0.R
946caf6b0f04b5f0efc23b2ce96b88ad *R/is.integer0.R
0163117d104b6a6facda74bea2f56ee7 *R/loghelpers.dbg.R
b0ae3bed21a530a79d220858814cf8f5 *R/loghelpers.prnt1.R
8e64dc50775bc53f072e3c5eb77eef51 *R/loghelpers.prnt2.R
5570e4d12de63462bb26879e0a7029be *R/loghelpers.wrt1.R
6c23c1b885f0f0bb74975795f23a411e *R/loghelpers.wrt2.R
fb0b758c7980fc140d40a2331b87f7d4 *R/ms.exec.R
76abf700c395b5d786883a377c968d3b *R/p2c2M.statcalc.R
ff38c627f74ed1f508fdc149c99e4069 *R/p2c2m.analyze.R
0d2b418a26674562842c78a2bdcabb5a *R/p2c2m.complete.R
b7ca0a26df1a99d04ff6cb62f1acb1a2 *R/p2c2m.init.R
6a9308b78fcad17c5344a74314eb5ebe *R/p2c2m.readstarb.R
f53a32b92fc8372d441a82fb29e97062 *R/readhelpers.constit.R
33aeb31747535bc77d1a42a5927b8143 *R/readhelpers.extract.R
33ce70c2dad1723c4b5c1ddc7fde84d5 *R/readhelpers.meta.R
7016a620eafd4374a92093e36a2a6690 *R/readhelpers.parse.R
cee3d5e51416295c30e55fc553a0724d *R/readtree.gtree.R
020914409b52f4b0f15d1ed13a2b87ea *R/readtree.phybase.R
70cbf0d3f102c9935032fa8ac4483044 *R/readtree.stree.R
2ea17fef48d101a19f04315eae14ca3d *R/rmext.R
651734dc2fb652dc7c3854f36a3c7eab *R/rowMedians.R
2502d7546bd367a7926dc8d36df41f8c *R/rowModes.R
8c1c71b239ccd1a21fda2a2719ec27ea *R/rtnlc.R
7bb12d19277ac33f67fc0a25b7ed6500 *R/sourceDir.R
9f9689c71275ccec5c82dd666a04b2ae *R/stats.acrossGenes.R
51df86c07f126efff753fe34f58bd889 *R/stats.main.R
a183279846b08bd967ee355fb91df3ed *R/stats.perGene.R
c0300ff4e79960e5ff36b5ec47b1abbe *R/statshelpers.cv.R
e7cefec8bc565aaa095325128a574810 *R/statshelpers.diffrnce.R
cbc4613df0f61a28f1c3bcbaee458f84 *R/statshelpers.qntls.R
258b0536b6d6b38080273cad5144ba2c *R/statshelpers.sigsgn.R
c1a46f1855719a675d23ab37b93688c6 *R/str2lst.R
19e141c744f78f6d860a9453bc45ff04 *build/vignette.rds
f9ba873e476ee9091f8e79262d37dc0d *data/sim.E.003.small.rda
2ef23aa6521406d18145c2f2b1cdd7a0 *data/viz_example_1.rda
6626fc2af2dcdf31a8f8ee709b7508ff *data/viz_example_2.rda
2a416e67b90ed9124ec671852451196d *exec/BEAST2phybase_1.7.py
640fcde4e97ef805c18e5f6e5a8612c0 *exec/BEAST2phybase_1.8.py
49aebd3830c66fd483e501896b59ee7f *exec/P2C2M.installPylibs.py
683a8352e76b1f80e34ff6096eb5c282 *exec/P2C2M.installRlibs.R
c51173d8d67fc3ad1dd6a1154a4d36e4 *exec/parseBEAUTiXML_1.7.py
aa4188d30f34d7fb82e0180833e2e19d *exec/parseBEAUTiXML_1.8.py
92b6e11633fbae1e11a42d51d7faa8d3 *inst/CITATION
cde4f0b61e0ee8a745580a653dc9f824 *inst/doc/P2C2M_CmdList.pdf
f40d80ba68f5c1c71e7c6e3848188908 *inst/doc/P2C2M_Vignette.R
c2fe0cf937cede47a9955a4e7cf95e4f *inst/doc/P2C2M_Vignette.Rnw
ed9e01bc6546cc053fa75a31d926ff89 *inst/doc/P2C2M_Vignette.pdf
cc2b1f52a8e2aebeb9b3de98bfa5c7fa *inst/extdata/sim.E.003.small/gene1.trees
2734f73a71ed18f0b2815694ae6a7b23 *inst/extdata/sim.E.003.small/gene10.trees
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9cfd837cf053c959bd2b1f83b82a0f0f *inst/extdata/sim.E.003.small/gene3.trees
068b399d169252a7f99fe4be43ea95e0 *inst/extdata/sim.E.003.small/gene4.trees
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64823fc0568ae639cd258e100bb8a67b *inst/extdata/sim.E.003.small/gene6.trees
1bf2f41022746817a9e57ed4292a6b40 *inst/extdata/sim.E.003.small/gene7.trees
04c38f072c8e4f34b3591e48530cb1b8 *inst/extdata/sim.E.003.small/gene8.trees
a5aa9b28935c741c27011362b1306f96 *inst/extdata/sim.E.003.small/gene9.trees
3437582e1551acda3fe5a147bd8155dd *inst/extdata/sim.E.003.small/sim.E.003.small.xml
fd423f566636dd013b9c9ce88704369f *inst/extdata/sim.E.003.small/species.trees
a449f7750fc5892b75b42101442fde8a *inst/msdir/corresp_about_license.pdf
43e2eaef2fe96bbe5a5f718915937d61 *inst/msdir/dist3.c
2c428d2dc3475132b1208be8b1e60099 *inst/msdir/microsat.c
1e5e318c1bfea98cc5aa70a1f16d4174 *inst/msdir/ms.c
666a5daaaac96585415bc7c279a550b8 *inst/msdir/ms.h
982da85047195f199c026847d89799ca *inst/msdir/rand1.c
a96d24acf5a0e6a976935b84d952f75b *inst/msdir/rand1t.c
11948708fb272ef7bf4b21210badfba7 *inst/msdir/rand2.c
5f48debe2765e980ea8bdfec1cb38962 *inst/msdir/rand2t.c
917bfcc558e1777a1097191cc085f0e7 *inst/msdir/sample_stats.c
8ba6c2431e2841c5a5217b60f7560d3c *inst/msdir/stats.c
a1690598555418e18c9ba26e359f2c38 *inst/msdir/streec.c
077a77b8d99521a99502471d5737a11f *inst/msdir/tajd.c
785b3ad72055be9b1e8ca99b89fb9d1e *man/P2C2M-package.Rd
acc32ec8e7e96a1964e9a99c332e9d72 *man/p2c2m.complete.Rd
814e30bc4a69e1beee1494b56526e92e *man/sim.E.003.small.Rd
7e8f69ed461af8f03f77a9fd7514c08f *man/viz_example.1.Rd
b2538a18df79770fa9cfad98d9de3d24 *man/viz_example.2.Rd
c2fe0cf937cede47a9955a4e7cf95e4f *vignettes/P2C2M_Vignette.Rnw
8cc8cc08e5482902dee31d1318aef546 *vignettes/P2C2M_Vignette.bib
