ae43ac46b044840fdc767ca503821ba9 *DESCRIPTION
31323d71364c3bc5ab08145919a6876e *NAMESPACE
a362759537a1796c7422c3f9140dee63 *NEWS
5301d38b5471fe1bb3e29b8b70ffc1b1 *R/NanoStringNorm.R
d5da7600d56a16008bf31f83806329b8 *R/Plot.NanoStringNorm.R
e469956a339cc50b9542ad43b7470030 *R/Plot.NanoStringNorm.gvis.R
ff81992df35407b756291a2e8cc85476 *R/background.normalization.R
36aeca48dfe96381f26f7f7ff09c497f *R/check.trait.values.R
1f7df884d9160a4d941fd74fdb303e91 *R/code.count.normalization.R
140804acfc31df95d275d0dd308353cf *R/get.batch.effects.R
ac4877e176707a964ee2395e549823e0 *R/get.beta.se.and.p.R
353c04d10c1f5b3a28df350a47c58f6f *R/get.gene.summary.stats.R
668427751d31e7f0b0498b150ef0662e *R/get.geo.mean.R
2d044aab69c66d6b67411b9907d01121 *R/get.mean.sd.and.cv.R
b9b6e271f2e5cc2d17e699cef8f4e618 *R/get.sample.summary.stats.R
ec6dc51e28f3543a863acdabcd5a336e *R/get.trait.summary.stats.R
5bdc2282632e049493b16d4bc103b2ca *R/get.ttest.and.foldchange.R
d31bc9bc978ef7681e20f28226153c58 *R/norm.comp.R
264fd84997489303c144237fda080262 *R/nsn.R
6dd8e38a42a2c6c7a422c04a1970d5f3 *R/other.normalization.R
6397ee86566ccd99731af462eb2edafe *R/other.normalization.quantile.R
7841bac0ba2dc6fb69dbf60195fe48ac *R/other.normalization.rank.normal.R
a787febb6106044801948bb5682b28cc *R/other.normalization.vsn.R
8468bd84e90aea362f5c7c3d729b4b2d *R/other.normalization.zscore.R
a4bb12041d1733ae0d1037ed9dadc392 *R/output.formatting.R
6a21e39e5be73f62ea7efdc4e98b3e79 *R/predict.concentration.R
d17468cc8137665e1f01354db2810a82 *R/probe.correction.factor.normalization.R
18fd5e6ab556dad34133a74adce261eb *R/read.markup.RCC.R
eb3ad380a5b23ffba3414fee1577bb1a *R/read.xls.RCC.R
dd20187346aa4c3cd9843839d96f6826 *R/sample.content.normalization.R
bfb0536f1417fe30fb44106358e739f1 *R/unit.testing.NanoStringNorm.R
c7d5f3d2c42be661b19925104b953f90 *build/vignette.rds
e33d4377d2803b3170cd524f984d5b34 *data/NanoString.rda
f017cf6d6d6aa2990a02ca7da6fd01aa *inst/doc/NanoStringNorm_Introduction.R
b4ed55d19712b00267def7daacf14d78 *inst/doc/NanoStringNorm_Introduction.Rnw
241a70c94379adb729b835af3694ff0a *inst/doc/NanoStringNorm_Introduction.pdf
768c0f4312ad3ecd60dc8fdd916df0d6 *inst/extdata/RCC_files/RCCCollector1_rat_tcdd.xls
c294ebf5ea4165f6be0d42022f1419d3 *inst/extdata/input/2011-11-01_NanoString_mRNA_TCDD_anno.txt
56c447752ecbef7e70abccc2241499a6 *inst/extdata/input/date_data.txt
832891191c7f20e7c35908b42f518a59 *inst/extdata/input/mRNA_TCDD.txt
fe443f0b7ce16ab872e1bc9b59eeac4e *inst/extdata/input/mRNA_TCDD_anno.txt
b41bd548533cf972fcd89279d6e02ecf *inst/extdata/input/mRNA_TCDD_matrix.txt
0be120f3bf7f889974b161d7b2d02de5 *inst/extdata/input/mRNA_TCDD_strain_info.txt
56c447752ecbef7e70abccc2241499a6 *inst/extdata/output/date_data.txt
54520a134f1e34a3fa6e0f2a88704c5e *inst/extdata/output/mRNA_TCDD_Batch_effects.txt.gz
7c937fd5abbffe550e4c0b80404a01b5 *inst/extdata/output/mRNA_TCDD_Check_Traits.txt.gz
98cc2b4939893a2837312da5b913a11a *inst/extdata/output/mRNA_TCDD_Gene_Summary.txt.gz
298417115a16992e2129bc2ece60fd83 *inst/extdata/output/mRNA_TCDD_NSN_none.txt.gz
e59fdbcaa31df27b55a23396cb072fce *inst/extdata/output/mRNA_TCDD_NSN_none_matrix.txt.gz
7c043c17056605611628fb49fa7e564b *inst/extdata/output/mRNA_TCDD_NSN_random.txt.gz
b78808891afeb107b94a7d56d839fa7c *inst/extdata/output/mRNA_TCDD_Output_Formatting_roundT_logT.txt.gz
cbe1729cb3b0ed3ee0b2e45b1bf166c2 *inst/extdata/output/mRNA_TCDD_Predict_Conc.txt.gz
a83e3d409c6c372c558824588c3b1114 *inst/extdata/output/mRNA_TCDD_Sample_Summary.txt.gz
0a94f392441d2725423195beabec3076 *inst/extdata/output/mRNA_TCDD_geo.mean_Code_Count_Normalization.txt.gz
bb2d5eae9798dc35aa70458833712326 *inst/extdata/output/mRNA_TCDD_housekeeping.geomean_SampleContent_Normalization.txt.gz
ccc0189a8f440ca95c277e2018624743 *inst/extdata/output/mRNA_TCDD_housekeeping.sum_SampleContent_Normalization.txt.gz
d37c908795e7b94ce1d1d471f59109c0 *inst/extdata/output/mRNA_TCDD_max_Background_Normalization.txt.gz
42ba97e8695006f9addeb00607d0cbb9 *inst/extdata/output/mRNA_TCDD_mean.2sd_Background_Normalization.txt.gz
bb4c9119af53d9d4b09d66a0fc7474d0 *inst/extdata/output/mRNA_TCDD_mean_Background_Normalization.txt.gz
cbe1707c50719a1d8049611e70b00c09 *inst/extdata/output/mRNA_TCDD_quantile_Other_Normalization.txt.gz
4b812e7014149d8ea81410bd35dbae15 *inst/extdata/output/mRNA_TCDD_sum_Code_Count_Normalization.txt.gz
dc4fa7e4f953bc70ff9ad53894f5ada4 *inst/extdata/output/mRNA_TCDD_top.geo.mean_SampleContent_Normalization.txt.gz
01d0e4aa749e4c3f0bd33e637354c45d *inst/extdata/output/mRNA_TCDD_top.mean_SampleContent_Normalization.txt.gz
777c9d94506d27a6b91fda23761a7877 *inst/extdata/output/mRNA_TCDD_total.sum_SampleContent_Normalization.txt.gz
fcbe1f6ca7e1eb2ff653e465263cf626 *inst/extdata/output/mRNA_TCDD_zscore_Other_Normalization.txt.gz
d23ed8f302874ddae719366755d5be3d *inst/scripts/create_test_input_output_files.R
36f0b8fb41349ce86ffde00825dcba95 *inst/unitTests/debug_test_probe.correction.factor.R
2306e04e5754c95a31c0dbfaf016f444 *inst/unitTests/test_NanoStringNorm.R
ccc77194af881bf057cd3b45be5c6e4d *inst/unitTests/test_background.normalization.R
056143bdd8b77a6f3e44137a2883b7cd *inst/unitTests/test_batch.effects.R
e731e68730a85240cca141ec6f307d5b *inst/unitTests/test_check.trait.values.R
8bf0092d7e7eb6d7c6769519d7a812a6 *inst/unitTests/test_code.count.normalization.R
4ca580537530eac142b33819717e0121 *inst/unitTests/test_other.normalization.R
93083c6f7ed3ed1eaa9a2310e41b7f4b *inst/unitTests/test_output.formatting.R
278154d40504f8f99bcd980bbc25c69b *inst/unitTests/test_predict.concentration.R
a055162aae43ca07ec1e576c205b8497 *inst/unitTests/test_sample.content.normalization.R
f610f71a54f71283988bdcb040750611 *inst/unitTests/test_sample.summary.R
2025c3ed464472462fdabf8fecc5b395 *man/NanoString.Rd
dbd4d5afe0ec919e463d72aaa2e70056 *man/NanoString.mRNA.Rd
0d65973301d986bb089880439d17fee4 *man/NanoStringNorm-package.Rd
3cbc9fc7bd7a0534cb1a42a12c359974 *man/NanoStringNorm.Rd
3e97857cfe5bdaf738b51512b25c106b *man/Plot.NanoStringNorm.Rd
bdfb2f304c906088b00134fc587e2d81 *man/Plot.NanoStringNorm.gvis.Rd
b060a23f29ada81a1b8fb8137e3a831f *man/norm.comp.Rd
cd2784711a37abeff4384b51ff64c85b *man/nsn.Rd
0b93e14e27994200ca2a8d6e59a8818b *man/other.normalization.Rd
090ae8ec59dc685c58596daaf02430d7 *man/read.markup.RCC.Rd
579db3990f7782bc26483bab382ca64b *man/read.xls.RCC.Rd
e24fd464523aab8291515ee10c01c356 *tests/NanoStringNorm.unitTests.R
b4ed55d19712b00267def7daacf14d78 *vignettes/NanoStringNorm_Introduction.Rnw
6e40f4cf141201651cb123486a07916a *vignettes/Rat_Strain_Normalization_Method_Comparison.png
aeae437cf5a4d99023240c34f081bff7 *vignettes/plot_NSN_gvis_geneStats_screenshot.png
a199f373c6ce6b0714d45cafb778bdec *vignettes/plot_NSN_gvis_sampleStats_screenshot.png
