# Import
import("methods")
import("GenomicRanges")
import("Matrix")
import("glmnet")
import("rtracklayer")
import("HiTC")


importFrom("stats", "as.formula", "lm", "glm", "poisson", "quasipoisson", "logLik")
importFrom("utils", "read.table")
importFrom("IRanges", "IRanges", "IRangesList", "breakInChunks","Views","RleViewsList","viewMeans")
importFrom("S4Vectors","queryHits")
importFrom("GenomeInfoDb", "seqlengths", "seqlevels", "seqlevels<-")
importFrom("rtracklayer","import")
importFrom("MASS", "glm.nb")
importFrom("Matrix", "cBind", "as.matrix", "Matrix")
importFrom("glmnet", "cv.glmnet")
importFrom("HiTC", "x_intervals", "intdata")


# Export
exportPattern("^[[:alpha:]]+")
