be659c484a72a0935b6602582e80746f *DESCRIPTION
a16d2d9f4ed0abb915e70e005f80c2b6 *NAMESPACE
d5b69757ea3562ee041a791a64084f2e *NEWS
cc19dd5767887e2611627378c64f77bf *R/AM.R
40c54655bba7c1b91a7d85ac67059eec *R/FPR4AM.R
786de2384479a977d552cb1720056c5d *R/GenomicRel.R
ad24efa95193b12852cbcd789674d1b2 *R/OpenGUI.R
d1bb06af5aaff55689ab8b75bbc00a43 *R/RcppExports.R
7e6d90e61660c10c1cac49e2754227e2 *R/ReadMap.R
ebc8ce502381537f8b674aecdc759f4a *R/ReadMarkerBin.R
9ff453cfde16d29d845209bc7ce3b84c *R/ReadPheno.R
0dfae37175c39b06bc319f0dbac2fdc2 *R/ReadZmat.R
6d68f63205120dc7527b533b4c98bdcb *R/ReshapeM.R
3336e6dd0f4abd0afc376495d080a5f0 *R/build_design_matrix.R
9eec87dff3de6bac57a3b5e5b3893a8c *R/calcMMt.R
55a85fed950362023ceebf3cfb7234f6 *R/calcVC.R
76a7b973e64cc954d04d42a6327a296f *R/calc_extBIC.R
a14c9da48642375ef90e3ad3472a1c5d *R/calc_extBIC_MLE.R
a09965ea0a08e828ec3d5a5ed4f1dff2 *R/calculateH.R
00465ef5aa3cf5a899f541665cf2df34 *R/calculateMMt.R
c9410e4ffcba8b05cf7ade58e6e217e0 *R/calculateMMt_sqrt_and_sqrtinv.R
e3540eaeab8f499e39feb1d2e034a5ef *R/calculateP.R
07247f7e59a3cf334b135004a5b8e8ac *R/calculate_a_and_vara.R
4833e73ab60b0b16d09046fc8d569337 *R/calculate_a_and_vara_batch.R
c85fff7b2c626d585030c0ef8a07abd1 *R/calculate_reduced_a.R
25343f76f1e043985d8715b7408c767c *R/calculate_reduced_a_batch.R
a1c40c36755ecaf2673f98e6512445c6 *R/calculate_reduced_vara.R
8003066b33257aff9526ea2d63400bbd *R/check_for_NA_in_trait.R
3bc04a6fa2898e64cf8c22a71e3ac948 *R/check_inputs.R
4b5af0ad4cbf2bae45ac996eea8e9a13 *R/check_inputs_mlam.R
02a1b035f4389b943422920da9662dcc *R/constructX.R
9b5483c912ea01a274c87d6dcd7c2aa8 *R/create_ascii.R
322e8bc1c7cbfb6aa96a42aca1113569 *R/create_bin.R
ad320ad04dc03eb0236e7c96e6d9cb12 *R/doquiet.R
5d9fcc8bf335e86223b218b7e5d2b8fe *R/emma_MLE.R
b08f9897d8819525892e4f0d251aa0f3 *R/emma_REMLE.R
e655781fe3299c9ece372d89c0a0bc76 *R/emma_delta_ML_LL_w_Z.R
bac68e2636157ffe496be4ec7483bfeb *R/emma_delta_ML_LL_wo_Z.R
46a8b12478f0ce4a289d07dea2ee8865 *R/emma_delta_ML_dLL_w_Z.R
69416a14961e606eddad62a79049c5f1 *R/emma_delta_REML_LL_w_Z.R
7e9ab3212232d74d7fc8450bb5e2aac6 *R/emma_delta_REML_dLL_w_Z.R
aa4437ce1975790231b3c08ab26cbc70 *R/emma_eigen_L_w_Z.R
94a43ea13d4fbbeb8839f9967dd86324 *R/emma_eigen_L_wo_Z.R
65b6a0d59eaf1618de567ae36cf6f31a *R/emma_eigen_R_w_Z.R
301cb08f92d910900f1eb70a3194c144 *R/emma_eigen_R_wo_Z.R
63b2f4985bb5e7447f74e9ef1a9e5995 *R/emma_misc.R
11644f89f0f0c623e00a4a6c36ec25a0 *R/extract_geno.R
5f5175b7a35c7a709819ced9609ddbfc *R/extract_geno_Mt.R
1ae6219504bf5d5196633857f4ee9b15 *R/find_qtl.R
11d0563a05c264db33c9c4b2d7b8f0b6 *R/form_results.R
15edcf78077d791a773974163555d973 *R/fullpath.R
2c50605bd87f26ba58097cdcd6cd8137 *R/onAttach.R
270f224728157d7843d82ef15c95d425 *R/print_final.R
c5ce4d28a1bc7b4fe4a0069b457e403b *R/print_header.R
16e2494b7ed744fd836447d8889295a8 *R/print_results.R
b8b0be03fa4d22e1ee99a837cf841fdd *R/print_title.R
13584a9de56ac9ef1bcf95e22553e9de *R/summary_am.R
c70ebf8026afb52ff863eaa983dde1ab *inst/extdata/Z.txt
7ace8998cb38736fa6b1881fb6ed8652 *inst/extdata/geno.ped
c030c9380094c490d3f3afc419d15980 *inst/extdata/geno.txt
6df7d6ab431e134a1c8f332053e6f289 *inst/extdata/map.txt
381616b1bc74db4c92880a0729185b3d *inst/extdata/pheno.txt
cd6a38002e84b0e9bf18735157ce5afe *inst/shiny_app/app.R
f1f70b900f4e32cbf0a8a27135e9e25d *inst/shiny_app/css.css
f8eb032c971c124de4d1724de2bf6d44 *inst/shiny_app/faq.rmd
1d8b41ff9898ad114aabf6bec515c92e *inst/shiny_app/help.html
3721d46912642f6dbc0773fe61324c33 *inst/shiny_app/www/images/HomeScreen.jpg
811a4dd80ab95b030fcf998fd1dc2fab *inst/shiny_app/www/images/Zmat_banner.jpg
baa765477d5e074add45b543b5ed5143 *inst/shiny_app/www/images/analyse_banner.jpg
9cfd01244dd5d1ac4690870f17206e09 *inst/shiny_app/www/images/findings_banner.jpg
300d8c024160302a266f0a2cbe87db42 *inst/shiny_app/www/images/logo.jpg
09f9debfbaed261b36247b475212fe9a *inst/shiny_app/www/images/map_banner.jpg
57d99ba760d893bc378a4294c256bdc4 *inst/shiny_app/www/images/marker_banner.jpg
8158634e700eb29b00403d995dbb0b62 *inst/shiny_app/www/images/pheno_banner.jpg
055d9280035f910148ad727299d3515d *inst/shiny_app/www/images/plot_banner.jpg
b4a94b786bffe582cf5824950a8596f4 *inst/shiny_app/www/loading.gif
013216ba6cf14fb19c17213e2f4b5cd9 *man/AM.Rd
0f496b2cbddd5c9423fdfd7198d6e376 *man/Eagle-package.Rd
12d0e41ae9ed20f3121a99884b25659f *man/FPR4AM.Rd
a495ea9451139c608db2c5f5c82c48d7 *man/OpenGUI.Rd
6c4ed8102849071ee966382532796e70 *man/ReadMap.Rd
227ac1098be76842a5658cd730245020 *man/ReadMarker.Rd
050b6f50fe898df2627ac6fa318fe9e2 *man/ReadPheno.Rd
79c277ba62f47b74ef86931b27d172ad *man/ReadZmat.Rd
d9b34548d7b2eea1b5bc9ff31d392cc6 *man/SummaryAM.Rd
52f5d9d15bf451419c09568293f73a87 *src/CreateASCIInospace.cpp
9177c3feafe6a6e3094805950a043211 *src/CreateASCIInospace_PLINK.cpp
20344cc0fe8e28d08f9e1e8b8678418c *src/CreateBIN.cpp
02dcf5fbf236599c746716a774d2483e *src/CreateBIN_PLINK.cpp
67bb2ca24873a9725ed76b0af8eb70c9 *src/Eagle.h
eb022d6e7db19a210bf7fd23100e16b8 *src/Makevars
c745f7d2fb185c02d4da2b54f7327c1f *src/Makevars.win
f1dc137990a169f12bad23bf3fa2a59a *src/RcppExports.cpp
ab605680d7629533ee4ab1a19257ec4a *src/ReadBlock.cpp
ceee64af7bd77c49a2e2f4cd68223ba6 *src/ReadBlockBin.cpp
32230438b3cc8d268242d9937078d059 *src/ReshapeM_rcpp.cpp
058211d98daa787e2db0a5d1c3f3a286 *src/calculateMMt_rcpp.cpp
30a6abd1d3e59727918439ed74af9a9e *src/calculate_a_and_vara_batch_rcpp.cpp
6eb7f9daecec57bbd4ba97962626ef6f *src/calculate_a_and_vara_rcpp.cpp
803738f3d927caf16da611845adc17c4 *src/calculate_reduced_a_rcpp.cpp
73e6db323679d903f185aebd22023e69 *src/createM_ASCII_rcpp.cpp
0753f0fe9ff2ac2700af1f9050307977 *src/createM_ASCII_rcpp.h
cc19ffb063021928eb0462ba0641c540 *src/createM_BIN_rcpp.cpp
5278cad45ad55e4363e104dacbe7f7cc *src/createM_BIN_rcpp.h
1bdeda437ea4865236f54ff1ec192eeb *src/createMt_ASCII_rcpp.cpp
bb3014b8150aa5b39145439920e9f9d6 *src/createMt_BIN_rcpp.cpp
27dfb41f7e6547a025dda086794f818c *src/extract_geno_Mt_rcpp.cpp
e13d85d9d365aed38e35901e1bd01ba6 *src/extract_geno_rcpp.cpp
937740e85e393ff1394b19099e314ec0 *src/fasttimer.cpp
f9bb6f36ac59a0b500d73e9fa9d8cec3 *src/getNumColumns.cpp
5d894fd8802b8eda6fac5500bfd2af04 *src/getNumRows.cpp
48b25116e5fe8223464fe563431cb389 *src/getRowColumn.cpp
27fae1e9d08f3ee21e3aa378f3ae412c *src/readblock.h
55812e46999a66eebb6308ae9b2d1bd6 *src/removeColumn.cpp
21c28b10981edb63fb9a947675143433 *src/removeRow.cpp
