b57e708fd983489ced52c9fc935d41b8 *DESCRIPTION
a22b7d4bb927332825c4b99bd8bb7095 *NAMESPACE
8ceea7e7b5c95169c9878ce1b7f34e8c *R/DepLogoR.R
aaf12d74ec0139c5b57f32d9e56f7435 *R/seqLogo.R
00b26a8ae33f1b191c36d056081567c4 *build/vignette.rds
d995abcbe342d4a03acf7b7841d426bf *inst/CITATION
5715e7774c9d62fbc1f631049c438c38 *inst/doc/DepLogo.R
d3b7cda8226d9fec07a68be3f9f115b4 *inst/doc/DepLogo.Rmd
7fc7aeaaadbb32d53440e9455f347cb4 *inst/doc/DepLogo.html
cf1ad1f43ead6395d52ce7daac739e9c *inst/extdata/Glycos_trans_3N.ann
fa5ee4226b70e07120985c090ab7d3ae *inst/extdata/cjun.txt
78b00d1b6db74d1f541cd533a35ce7ff *inst/extdata/long_bak.txt
3bf2d3d58aaf4e48ad0d4a2aef2c7705 *inst/extdata/nrsf.txt
50e1d6d6f4ee9e4e1e9098aa54a1350a *inst/extdata/pwm_bak.txt
70e86fec552feab13b6611f755663fd2 *inst/extdata/wam2_bak.txt
7d69526b3b8d8e361544c8aac373aff9 *inst/extdata/wam_2deps.txt
7ab5e9fc1895b08fda9e06d93d93a528 *inst/extdata/wam_3deps.txt
e987916594da24196623666ed81858b2 *inst/extdata/wam_4deps.txt
d4bcbaad8cba15f5efe68cd102ac9f52 *inst/extdata/wam_5deps.txt
d84e0236b42f818f5821a2bca74fb08e *inst/extdata/wam_bak.txt
1a1de85eccb0dd3787e2d472a4b1b040 *man/Alphabet.Rd
29ef3a63a56cc8b8f3ad692b2ea05678 *man/DLData.Rd
d38da12ef78b59f1438f2e0fc68863e4 *man/alphabet.dna.Rd
b1c74cb150b39c0cf6242df203ca690f *man/alphabet.dna.gap.Rd
6135958bc82041c7e50b838e49e4ea69 *man/alphabet.protein.Rd
9eac3c7daa28977cc4f3d9f7db5075b4 *man/alphabet.protein.gap.Rd
55c9262253d12b17400af840f25a9e5e *man/alphabet.rna.Rd
195c6bef285f296edff5c5237751d477 *man/alphabet.rna.gap.Rd
2e8b238c5b470030095968516583ed01 *man/colorchart.Rd
0f7a1089b0f03b9ad124d6837043301f *man/deprects.Rd
56e120f1e2d7a3fc21dbcbaf720f2dc2 *man/filter.by.conservation.Rd
42dea180695801ae075d705f7596c505 *man/filter.by.dependencies.Rd
c1e72dd02aafb9afc525d0edfac88054 *man/filter.by.gaps.Rd
38f354a2877fb836d0a0a3644bca76fb *man/filterColumns.Rd
549b370752ebb0848778dee1d9c3a7c8 *man/getDeps.Rd
849bd4ac0467a52fa839db62c7562bbc *man/getPWM.Rd
c5b23e7a1f8144f75af50113e496d39c *man/logo.Rd
96c06f9f4d1f453f5063d29a46e660b5 *man/partition.Rd
aa1d48745a12f3c6ec38177e25802d75 *man/plotBlocks.Rd
025813d678ea41b2a276df4f6728130c *man/plotDeparcs.Rd
31f5c12b100dc9f9d183c2959a72067a *man/plotDeplogo.Rd
bc0b2e88d0395efe175004a5f03ce5c7 *man/plotDepmatrix.Rd
a5fdbb8aacbe300a09fb4e352aaca362 *man/replaceColors.Rd
c9d5bfc875eadcd8d2bdd228243cd6d9 *man/revcom.Rd
1af2462441246015f3e9644dcb7706c2 *man/subBoxes.Rd
d04c7353401447a009f47b70c8c431b4 *man/subLines.Rd
07f11e50ab19c3980de5b9ceefdc4d2e *man/suggestColors.Rd
3820c4448191c0d555d980f47c02ce30 *man/summary.DLData.Rd
196ac48d9c48eb94e73609e678febe5f *tests/testthat.R
c48e967d7207d7ced61b02cf337c4ecc *tests/testthat/Rplots.pdf
505eb5f556e754bc6feb5a8f4b68073e *tests/testthat/test-DLData.R
6eacf795f8c7ca4ed8091e5e21772fdb *tests/testthat/test-Dependencies.R
4c5479d9397185af9d47fe814efeaa60 *tests/testthat/test-Filter.R
09aa627fa522fb783bc4a5a14103aba7 *tests/testthat/test-Partitioning.R
9b9722dd22054b2be3995461cea6cd68 *tests/testthat/test-Plots.R
829af570ff24de394329cad571104436 *tests/testthat/test-Revcom.R
d3b7cda8226d9fec07a68be3f9f115b4 *vignettes/DepLogo.Rmd
9d8ac1f980ea8c3d944b0ade08ffea8d *vignettes/annotated_deplogo.png
60220e6756f54932386430cdfac28e34 *vignettes/references.bibtex
