adce0253962e5341e7635a5430965412 *DESCRIPTION
1580c9622cf3b25836caba3dec04262a *NAMESPACE
e385a7de9f1766b098cc1ab8dcaebe8a *R/brundle-data.R
04d2c32fcc71bc53187e1d5750631d70 *R/brundle.R
109ccee3c2bdca2882646eaeefa74ec7 *README.md
518dd07777e73d8b01353623e68c45d4 *data/dbaControl.rda
771ef0e69a43f6555e61dd7c9f157111 *data/dbaExperiment.rda
0b87db1b861cf1fbe0e31a1d11330b3d *data/jg.conditions.rda
8c83b5aa2be41ba088978c6f30cba660 *data/jg.controlCountsTreated.rda
ee13f7b89ed445a23cae42562e04465f *data/jg.controlCountsUntreated.rda
36f9d902e73139db06845ade20b74895 *data/jg.controlPeakset.rda
a2d8407fdbdbceb11203694c1dfa1146 *data/jg.controlPeaksetDeSeq.rda
1c405e36e083b50957f64c6a63fdf0f8 *data/jg.controlResultsDeseq.rda
609a000d78c06b5a3a492ccacb4b0cde *data/jg.experimentPeakset.rda
6b06f28383465f123746a9f902644b19 *data/jg.experimentResultsDeseq.rda
37cdede7b2c65c0dacf6a26ff6432ef9 *inst/extdata/samplesheet_SLX14438_hs_CTCF_DBA.csv
8979c16871994f80bebef27b9bd63ff0 *inst/extdata/samplesheet_SLX14438_hs_ER_DBA.csv
86a53319fe4b3b36a1c1e2f569ad6b4c *man/Brundle.Rd
80308ac0c16d92737b08e2ef8062b646 *man/dbaControl.Rd
33ae928c95fbea8a162207e1d75fb729 *man/dbaExperiment.Rd
fd3fffa3f07f28d23a127422c71e7223 *man/jg.applyNormalisation.Rd
4e9b9046a88092b496989ac012c42119 *man/jg.conditions.Rd
6de2e93e1f66bd4b8186d2e77db91dcd *man/jg.controlCountsTreated.Rd
b756187ec576bf31349aa54e2201bf69 *man/jg.controlCountsUntreated.Rd
46821720c2b973af76171ce9841f5d9e *man/jg.controlPeaks.Rd
1e777ddd4bd67b4dc59887ea1c08c426 *man/jg.controlPeakset.Rd
d519443767595e179126d4eeb42f199b *man/jg.controlPeaksetDeSeq.Rd
ef61a79c831cf1357de2ad392cafca46 *man/jg.controlResultsDeseq.Rd
b087078d3f46f3507716b0e4c09c86fd *man/jg.convertPeakset.Rd
bf8346577d9bd5e4627e562b49ee9b69 *man/jg.correctDBASizeFactors.Rd
a7f2c7393caa3460434ef3394c98d5cd *man/jg.countAlignedMReads.Rd
6bdb094d17a1932f0999b2679166f856 *man/jg.dbaGetPeakset.Rd
83f829a2fedcd6433bcc79f4cf8e0cad *man/jg.experimentPeakset.Rd
c9def0a2e11cac28b10b0f072ed55ff6 *man/jg.experimentResultsDeseq.Rd
91854db78227393d9c313d7e2b17a1b6 *man/jg.getControlCounts.Rd
e93afc5267546619b542df4a363a3365 *man/jg.getCorrectionFactor.Rd
05e57364e0646510c05198f6efb5dab1 *man/jg.getDba.Rd
29fb7a7e0c4ee3069d79871ec66f5e11 *man/jg.getNormalizationCoefficient.Rd
5ce73552142512995f1a541e3850c20f *man/jg.getSampleIds.Rd
1928e89133b75c97bdcb90507ce2a692 *man/jg.plotDeSeq.Rd
db8e81b66238e91614e0d40eaeb568b9 *man/jg.plotDeSeqCombined.Rd
e42c7b93cd8d6830629e1ff116ffc6e3 *man/jg.plotMA.Rd
5f3af27d92060ef1699eff5a1942b628 *man/jg.plotNormalization.Rd
e562aa87df29721c61bddc87629d42d6 *man/jg.runDeSeq.Rd
